Variant report

Variant	rs267792
Chromosome Location	chr5:36078775-36078776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35928008..35930588-chr5:36078739..36080969,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1113073	0.83[EUR][1000 genomes]
rs12513526	0.82[CEU][hapmap]
rs12654974	0.83[EUR][1000 genomes]
rs12655763	0.85[CEU][hapmap]
rs12658867	0.81[CEU][hapmap]
rs13156321	0.85[CEU][hapmap]
rs13163292	0.84[EUR][1000 genomes]
rs13177876	0.84[CEU][hapmap]
rs13181789	0.83[EUR][1000 genomes]
rs1393158	0.82[EUR][1000 genomes]
rs144694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs145190	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1501817	0.82[EUR][1000 genomes]
rs155540	1.00[YRI][hapmap]
rs155550	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs155551	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17342682	0.85[CEU][hapmap]
rs17343598	0.81[CEU][hapmap]
rs173611	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1827369	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1827371	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs198353	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2012367	0.85[CEU][hapmap]
rs2455316	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs267754	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs267756	1.00[YRI][hapmap]
rs267758	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs267761	0.91[YRI][hapmap]
rs267763	1.00[YRI][hapmap]
rs267764	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs267766	0.81[CEU][hapmap]
rs267787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267788	1.00[YRI][hapmap]
rs33615	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33618	1.00[YRI][hapmap]
rs33680	1.00[YRI][hapmap]
rs33681	1.00[YRI][hapmap]
rs34165875	0.83[EUR][1000 genomes]
rs35746165	0.81[EUR][1000 genomes]
rs40029	1.00[YRI][hapmap]
rs4021314	0.82[EUR][1000 genomes]
rs42213	1.00[YRI][hapmap]
rs423753	1.00[YRI][hapmap]
rs4415106	0.82[CEU][hapmap]
rs4869614	0.85[CEU][hapmap]
rs766064	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7705825	0.83[EUR][1000 genomes]
rs7705975	0.82[EUR][1000 genomes]
rs7706216	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36073000-36079400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36074400-36079000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:36074400-36079400	Weak transcription	Dnd41	blood
5	chr5:36074400-36079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:36074400-36079600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:36074400-36079600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:36074400-36079600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:36074400-36082000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:36077800-36079400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:36077800-36079400	Enhancers	Brain Cingulate Gyrus	brain
12	chr5:36078200-36079800	Enhancers	Brain Substantia Nigra	brain
13	chr5:36078400-36078800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr5:36078600-36078800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:36078600-36078800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:36078600-36078800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:36078600-36079400	Enhancers	Brain Angular Gyrus	brain
18	chr5:36078600-36079400	Weak transcription	Spleen	Spleen
19	chr5:36078600-36079800	Enhancers	Brain Hippocampus Middle	brain

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