Variant report

Variant	rs155540
Chromosome Location	chr5:36112800-36112801
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs155539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155542	1.00[AMR][1000 genomes]
rs155545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155547	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155549	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267752	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267756	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267760	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267761	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs267762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267763	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267788	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267791	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267794	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33618	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33675	1.00[AMR][1000 genomes]
rs33677	1.00[AMR][1000 genomes]
rs33680	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33681	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs40029	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs40031	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41113	1.00[AMR][1000 genomes]
rs41114	1.00[AMR][1000 genomes]
rs42213	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs423753	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56135557	1.00[AMR][1000 genomes]
rs56989767	1.00[AMR][1000 genomes]
rs57273729	1.00[AMR][1000 genomes]
rs57579833	1.00[AMR][1000 genomes]
rs58168401	1.00[AMR][1000 genomes]
rs58457055	1.00[AMR][1000 genomes]
rs59164775	1.00[AMR][1000 genomes]
rs73076197	1.00[AMR][1000 genomes]
rs73076199	1.00[AMR][1000 genomes]
rs73078005	1.00[AMR][1000 genomes]
rs73078010	1.00[AMR][1000 genomes]
rs73078011	1.00[AMR][1000 genomes]
rs73748791	1.00[AMR][1000 genomes]
rs73751604	1.00[AMR][1000 genomes]
rs73751606	1.00[AMR][1000 genomes]
rs73751607	1.00[AMR][1000 genomes]
rs73751624	1.00[AMR][1000 genomes]
rs7713019	1.00[AMR][1000 genomes]
rs7723762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
3	nsv4795	chr5:36106115-36150407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36092800-36116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:36096600-36128600	Weak transcription	Fetal Brain Male	brain
3	chr5:36098800-36113200	Weak transcription	Fetal Stomach	stomach
4	chr5:36099000-36116800	Weak transcription	Fetal Intestine Small	intestine
5	chr5:36100200-36127600	Weak transcription	Pancreas	Pancrea
6	chr5:36100200-36139400	Weak transcription	Gastric	stomach
7	chr5:36100800-36127600	Weak transcription	Spleen	Spleen
8	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
9	chr5:36102000-36118400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:36102200-36118400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr5:36102600-36129200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:36102600-36141400	Weak transcription	Hela-S3	cervix
13	chr5:36103000-36114400	Strong transcription	HSMM	muscle
14	chr5:36103000-36128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:36103600-36118400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:36103600-36147200	Weak transcription	HUVEC	blood vessel
17	chr5:36103800-36117600	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:36103800-36118400	Strong transcription	Liver	Liver
19	chr5:36104000-36118400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr5:36104000-36118600	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr5:36104800-36139400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:36105400-36128000	Weak transcription	Lung	lung
23	chr5:36105600-36125600	Weak transcription	Fetal Heart	heart
24	chr5:36105600-36142400	Weak transcription	NH-A	brain
25	chr5:36106200-36129200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr5:36106200-36139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:36108000-36115400	Weak transcription	Psoas Muscle	Psoas
28	chr5:36108200-36113000	Weak transcription	Left Ventricle	heart
29	chr5:36108200-36113400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr5:36108200-36113800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr5:36108200-36114000	Weak transcription	NHDF-Ad	bronchial
32	chr5:36108200-36115400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr5:36108200-36115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:36108200-36115400	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:36108200-36115400	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:36108200-36116200	Weak transcription	Ovary	ovary
37	chr5:36108200-36117000	Weak transcription	Small Intestine	intestine
38	chr5:36108200-36117200	Weak transcription	Thymus	Thymus
39	chr5:36108200-36122400	Weak transcription	GM12878-XiMat	blood
40	chr5:36108200-36126000	Weak transcription	Right Ventricle	heart
41	chr5:36108200-36127400	Weak transcription	HSMMtube	muscle
42	chr5:36108200-36127600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr5:36108200-36127600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr5:36108200-36127800	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:36108200-36129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:36108200-36139000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:36108200-36139200	Weak transcription	Esophagus	oesophagus
48	chr5:36108200-36139400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:36108200-36139400	Weak transcription	Aorta	Aorta
50	chr5:36108400-36115200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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