Variant report

Variant	rs267762
Chromosome Location	chr5:36140560-36140561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs155539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155540	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155542	1.00[AMR][1000 genomes]
rs155545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155547	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155548	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267752	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267760	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267761	1.00[AMR][1000 genomes]
rs267763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267788	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267791	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267794	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33614	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33675	1.00[AMR][1000 genomes]
rs33677	1.00[AMR][1000 genomes]
rs33680	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33681	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs40029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs40031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41113	1.00[AMR][1000 genomes]
rs41114	1.00[AMR][1000 genomes]
rs42213	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs423753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56135557	1.00[AMR][1000 genomes]
rs56989767	1.00[AMR][1000 genomes]
rs57273729	1.00[AMR][1000 genomes]
rs57579833	1.00[AMR][1000 genomes]
rs58168401	1.00[AMR][1000 genomes]
rs58457055	1.00[AMR][1000 genomes]
rs59164775	1.00[AMR][1000 genomes]
rs73076197	1.00[AMR][1000 genomes]
rs73076199	1.00[AMR][1000 genomes]
rs73078005	1.00[AMR][1000 genomes]
rs73078010	1.00[AMR][1000 genomes]
rs73078011	1.00[AMR][1000 genomes]
rs73748791	1.00[AMR][1000 genomes]
rs73751604	1.00[AMR][1000 genomes]
rs73751606	1.00[AMR][1000 genomes]
rs73751607	1.00[AMR][1000 genomes]
rs73751624	1.00[AMR][1000 genomes]
rs7713019	1.00[AMR][1000 genomes]
rs7723762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
3	nsv4795	chr5:36106115-36150407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
2	chr5:36102600-36141400	Weak transcription	Hela-S3	cervix
3	chr5:36103600-36147200	Weak transcription	HUVEC	blood vessel
4	chr5:36105600-36142400	Weak transcription	NH-A	brain
5	chr5:36108400-36150600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:36108600-36142800	Weak transcription	Fetal Kidney	kidney
7	chr5:36117400-36150200	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:36122400-36147800	Weak transcription	NHDF-Ad	bronchial
9	chr5:36126800-36150400	Weak transcription	Fetal Heart	heart
10	chr5:36128200-36150800	Weak transcription	Psoas Muscle	Psoas
11	chr5:36129400-36149200	Weak transcription	Fetal Brain Male	brain
12	chr5:36129800-36146600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:36129800-36148400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:36130000-36140600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:36130000-36143200	Weak transcription	K562	blood
16	chr5:36130000-36147400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:36132600-36150800	Weak transcription	Right Ventricle	heart
18	chr5:36134200-36150400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:36136600-36149400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr5:36136600-36150200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:36136600-36150600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:36136600-36150600	Weak transcription	HSMMtube	muscle
23	chr5:36138000-36141200	Strong transcription	Primary T cells from cord blood	blood
24	chr5:36138800-36141200	ZNF genes & repeats	Dnd41	blood
25	chr5:36139000-36140600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:36139000-36140600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:36139000-36140600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
28	chr5:36139000-36140600	ZNF genes & repeats	Fetal Brain Female	brain
29	chr5:36139000-36140600	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr5:36139000-36140600	ZNF genes & repeats	Fetal Thymus	thymus
31	chr5:36139000-36140600	ZNF genes & repeats	Thymus	Thymus
32	chr5:36139000-36140800	ZNF genes & repeats	Fetal Stomach	stomach
33	chr5:36139000-36140800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr5:36139000-36141000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:36139000-36141400	ZNF genes & repeats	GM12878-XiMat	blood
36	chr5:36139000-36150600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:36139200-36140600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
38	chr5:36139200-36140600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr5:36139200-36140600	Strong transcription	Esophagus	oesophagus
40	chr5:36139200-36140600	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr5:36139200-36140600	ZNF genes & repeats	Spleen	Spleen
42	chr5:36139200-36140800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
43	chr5:36139200-36140800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:36139200-36140800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:36139200-36140800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:36139200-36140800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:36139200-36140800	ZNF genes & repeats	Lung	lung
48	chr5:36139200-36141000	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr5:36139400-36140600	Strong transcription	Aorta	Aorta
50	chr5:36139400-36140600	Strong transcription	Brain Inferior Temporal Lobe	brain

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