Variant report

Variant	rs41113
Chromosome Location	chr5:36155450-36155451
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36151113..36153475-chr5:36154153..36156176,2	MCF-7	breast:
2	chr5:36149758..36152986-chr5:36154099..36157491,3	MCF-7	breast:
3	chr5:36150277..36153703-chr5:36154371..36162094,13	K562	blood:

Variant related genes	Relation type
ENSG00000164187	Chromatin interaction
ENSG00000145604	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs155539	1.00[AMR][1000 genomes]
rs155540	1.00[AMR][1000 genomes]
rs155542	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs155545	1.00[AMR][1000 genomes]
rs155547	1.00[AMR][1000 genomes]
rs155548	1.00[AMR][1000 genomes]
rs155549	1.00[AMR][1000 genomes]
rs267752	1.00[AMR][1000 genomes]
rs267755	1.00[AMR][1000 genomes]
rs267756	1.00[AMR][1000 genomes]
rs267760	1.00[AMR][1000 genomes]
rs267761	1.00[AMR][1000 genomes]
rs267762	1.00[AMR][1000 genomes]
rs267763	1.00[AMR][1000 genomes]
rs267788	1.00[AMR][1000 genomes]
rs267791	1.00[AMR][1000 genomes]
rs267794	1.00[AMR][1000 genomes]
rs33614	1.00[AMR][1000 genomes]
rs33618	1.00[AMR][1000 genomes]
rs33675	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs33677	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33680	1.00[AMR][1000 genomes]
rs33681	1.00[AMR][1000 genomes]
rs40029	1.00[AMR][1000 genomes]
rs40031	1.00[AMR][1000 genomes]
rs41114	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs42213	1.00[AMR][1000 genomes]
rs423753	1.00[AMR][1000 genomes]
rs56135557	1.00[AMR][1000 genomes]
rs56989767	1.00[AMR][1000 genomes]
rs57273729	1.00[AMR][1000 genomes]
rs57579833	1.00[AMR][1000 genomes]
rs58168401	1.00[AMR][1000 genomes]
rs58457055	1.00[AMR][1000 genomes]
rs59164775	1.00[AMR][1000 genomes]
rs6890988	1.00[AMR][1000 genomes]
rs73076197	1.00[AMR][1000 genomes]
rs73076199	1.00[AMR][1000 genomes]
rs73078005	1.00[AMR][1000 genomes]
rs73078010	1.00[AMR][1000 genomes]
rs73078011	1.00[AMR][1000 genomes]
rs73748791	1.00[AMR][1000 genomes]
rs73751604	1.00[AMR][1000 genomes]
rs73751606	1.00[AMR][1000 genomes]
rs73751607	1.00[AMR][1000 genomes]
rs73751624	1.00[AMR][1000 genomes]
rs7713019	1.00[AMR][1000 genomes]
rs7723762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36152800-36155600	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
2	chr5:36153000-36156200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:36153000-36156400	Weak transcription	Aorta	Aorta
4	chr5:36153000-36156400	Transcr. at gene 5' and 3'	HSMM	muscle
5	chr5:36153200-36156400	Weak transcription	Esophagus	oesophagus
6	chr5:36153200-36157400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:36153200-36157600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:36153200-36158000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:36153200-36160800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:36153200-36164000	Weak transcription	Colonic Mucosa	Colon
11	chr5:36153400-36156200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:36153400-36156800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:36153400-36156800	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
14	chr5:36153600-36156400	Weak transcription	Psoas Muscle	Psoas
15	chr5:36153600-36157400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr5:36153600-36159000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:36153800-36156200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:36153800-36156400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:36153800-36158400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:36153800-36159000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr5:36153800-36160800	Weak transcription	Gastric	stomach
22	chr5:36153800-36162600	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr5:36153800-36164000	Weak transcription	Pancreas	Pancrea
24	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:36154000-36155800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:36154000-36155800	Weak transcription	NHDF-Ad	bronchial
27	chr5:36154000-36156000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:36154000-36156000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:36154000-36156200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:36154000-36156200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr5:36154000-36156200	Weak transcription	Ovary	ovary
32	chr5:36154000-36156200	Weak transcription	Right Atrium	heart
33	chr5:36154000-36156800	Genic enhancers	Fetal Intestine Small	intestine
34	chr5:36154000-36158000	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr5:36154000-36158400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:36154000-36159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr5:36154000-36160600	Weak transcription	Stomach Mucosa	stomach
38	chr5:36154000-36162000	Genic enhancers	HepG2	liver
39	chr5:36154000-36162600	Genic enhancers	Fetal Intestine Large	intestine
40	chr5:36154000-36168200	Strong transcription	Primary T cells from cord blood	blood
41	chr5:36154000-36168200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr5:36154000-36175400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:36154000-36175600	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr5:36154000-36175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:36154200-36155800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr5:36154200-36155800	Weak transcription	NH-A	brain
48	chr5:36154200-36156000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:36154200-36156000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr5:36154200-36156200	Weak transcription	Rectal Mucosa Donor 29	rectum

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