The 2.0 version of rSNPBase

Variant report

Variant rs33677
Chromosome Location chr5:36156776-36156777
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:36153200-36157400 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr5:36153200-36157600 Weak transcription Primary neutrophils fromperipheralblood blood
3 chr5:36153200-36158000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:36153200-36160800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr5:36153200-36164000 Weak transcription Colonic Mucosa Colon
6 chr5:36153400-36156800 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr5:36153400-36156800 Transcr. at gene 5' and 3' Fetal Muscle Trunk muscle
8 chr5:36153600-36157400 Strong transcription Primary monocytes fromperipheralblood blood
9 chr5:36153600-36159000 Transcr. at gene 5' and 3' hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr5:36153800-36158400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr5:36153800-36159000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr5:36153800-36160800 Weak transcription Gastric stomach
13 chr5:36153800-36162600 Strong transcription H9 Cell Line embryonic stem cell
14 chr5:36153800-36164000 Weak transcription Pancreas Pancrea
15 chr5:36153800-36184400 Strong transcription HUES64 Cell Line embryonic stem cell
16 chr5:36154000-36156800 Genic enhancers Fetal Intestine Small intestine
17 chr5:36154000-36158000 Strong transcription Brain Inferior Temporal Lobe brain
18 chr5:36154000-36158400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr5:36154000-36159600 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr5:36154000-36160600 Weak transcription Stomach Mucosa stomach
21 chr5:36154000-36162000 Genic enhancers HepG2 liver
22 chr5:36154000-36162600 Genic enhancers Fetal Intestine Large intestine
23 chr5:36154000-36168200 Strong transcription Primary T cells from cord blood blood
24 chr5:36154000-36168200 Weak transcription Rectal Smooth Muscle rectum
25 chr5:36154000-36175400 Strong transcription iPS-18 Cell Line embryonic stem cell
26 chr5:36154000-36175600 Strong transcription H1 Cell Line embryonic stem cell
27 chr5:36154000-36175600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr5:36154000-36184200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr5:36154200-36156800 Strong transcription Primary hematopoietic stem cells blood
30 chr5:36154200-36157200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr5:36154200-36158800 Weak transcription Duodenum Mucosa Duodenum
32 chr5:36154200-36168400 Strong transcription Primary T cells fromperipheralblood blood
33 chr5:36154200-36179000 Strong transcription A549 lung
34 chr5:36154200-36184400 Strong transcription HUES6 Cell Line embryonic stem cell
35 chr5:36154200-36184400 Strong transcription Fetal Thymus thymus
36 chr5:36154400-36157200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr5:36154400-36157400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr5:36154400-36157400 Strong transcription Monocytes-CD14+_RO01746 blood
39 chr5:36154400-36157600 Strong transcription Primary hematopoietic stem cells short term culture blood
40 chr5:36154400-36158800 Genic enhancers Muscle Satellite Cultured Cells --
41 chr5:36154400-36159000 Genic enhancers Fetal Brain Female brain
42 chr5:36154400-36159200 Genic enhancers Breast Myoepithelial Primary Cells Breast
43 chr5:36154400-36162400 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr5:36154400-36164800 Strong transcription Cortex derived primary cultured neurospheres brain
45 chr5:36154400-36175000 Strong transcription Primary B cells from peripheral blood blood
46 chr5:36154400-36175200 Strong transcription Thymus Thymus
47 chr5:36154400-36184400 Strong transcription iPS-20b Cell Line embryonic stem cell
48 chr5:36154400-36210800 Weak transcription Small Intestine intestine
49 chr5:36154600-36157400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr5:36154600-36157800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015