Variant report

Variant	rs33681
Chromosome Location	chr5:36099218-36099219
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UGT3A2-3	chr5:36098658-36102483	NONHSAT101022

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs155539	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155540	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155542	1.00[AMR][1000 genomes]
rs155545	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155547	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155549	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267752	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267755	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267756	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267760	1.00[AMR][1000 genomes]
rs267761	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs267762	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267763	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267788	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267790	0.87[AFR][1000 genomes]
rs267791	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267794	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33618	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33675	1.00[AMR][1000 genomes]
rs33677	1.00[AMR][1000 genomes]
rs33680	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs40029	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs40031	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41113	1.00[AMR][1000 genomes]
rs41114	1.00[AMR][1000 genomes]
rs42213	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs423753	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56135557	1.00[AMR][1000 genomes]
rs56989767	1.00[AMR][1000 genomes]
rs57273729	1.00[AMR][1000 genomes]
rs57579833	1.00[AMR][1000 genomes]
rs58168401	1.00[AMR][1000 genomes]
rs58457055	1.00[AMR][1000 genomes]
rs59164775	1.00[AMR][1000 genomes]
rs73076197	1.00[AMR][1000 genomes]
rs73076199	1.00[AMR][1000 genomes]
rs73078005	1.00[AMR][1000 genomes]
rs73078010	1.00[AMR][1000 genomes]
rs73078011	1.00[AMR][1000 genomes]
rs73748791	1.00[AMR][1000 genomes]
rs73751604	1.00[AMR][1000 genomes]
rs73751606	1.00[AMR][1000 genomes]
rs73751607	1.00[AMR][1000 genomes]
rs73751624	1.00[AMR][1000 genomes]
rs7713019	1.00[AMR][1000 genomes]
rs7723762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36090600-36099600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:36090800-36107000	Weak transcription	HSMMtube	muscle
3	chr5:36092200-36106000	Weak transcription	Primary B cells from cord blood	blood
4	chr5:36092800-36116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:36093600-36104000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:36093600-36107600	Weak transcription	Psoas Muscle	Psoas
7	chr5:36095600-36103000	Weak transcription	HSMM	muscle
8	chr5:36096600-36128600	Weak transcription	Fetal Brain Male	brain
9	chr5:36096800-36104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:36097200-36104000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:36098200-36100000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:36098200-36104200	Weak transcription	Primary T cells from cord blood	blood
13	chr5:36098200-36106800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:36098400-36102000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:36098400-36103800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:36098600-36102200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr5:36098600-36103200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:36098600-36104000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr5:36098600-36104000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr5:36098600-36104200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr5:36098600-36106200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:36098600-36106800	Weak transcription	Left Ventricle	heart
23	chr5:36098600-36107400	Weak transcription	Right Ventricle	heart
24	chr5:36098600-36107800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:36098800-36104000	Weak transcription	Brain Angular Gyrus	brain
26	chr5:36098800-36113200	Weak transcription	Fetal Stomach	stomach
27	chr5:36099000-36102400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:36099000-36102600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:36099000-36104000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr5:36099000-36104200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:36099000-36116800	Weak transcription	Fetal Intestine Small	intestine
32	chr5:36099200-36103800	Weak transcription	Liver	Liver

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