Variant report

Variant	rs73751624
Chromosome Location	chr5:36254272-36254273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs155539	1.00[AMR][1000 genomes]
rs155540	1.00[AMR][1000 genomes]
rs155542	1.00[AMR][1000 genomes]
rs155545	1.00[AMR][1000 genomes]
rs155547	1.00[AMR][1000 genomes]
rs155548	1.00[AMR][1000 genomes]
rs155549	1.00[AMR][1000 genomes]
rs267752	1.00[AMR][1000 genomes]
rs267755	1.00[AMR][1000 genomes]
rs267756	1.00[AMR][1000 genomes]
rs267760	1.00[AMR][1000 genomes]
rs267761	1.00[AMR][1000 genomes]
rs267762	1.00[AMR][1000 genomes]
rs267763	1.00[AMR][1000 genomes]
rs267788	1.00[AMR][1000 genomes]
rs267791	1.00[AMR][1000 genomes]
rs267794	1.00[AMR][1000 genomes]
rs33614	1.00[AMR][1000 genomes]
rs33618	1.00[AMR][1000 genomes]
rs33675	1.00[AMR][1000 genomes]
rs33677	1.00[AMR][1000 genomes]
rs33680	1.00[AMR][1000 genomes]
rs33681	1.00[AMR][1000 genomes]
rs40029	1.00[AMR][1000 genomes]
rs40031	1.00[AMR][1000 genomes]
rs41113	1.00[AMR][1000 genomes]
rs41114	1.00[AMR][1000 genomes]
rs42213	1.00[AMR][1000 genomes]
rs423753	1.00[AMR][1000 genomes]
rs56135557	1.00[AMR][1000 genomes]
rs56989767	1.00[AMR][1000 genomes]
rs59164775	1.00[AMR][1000 genomes]
rs6890988	1.00[AMR][1000 genomes]
rs73748791	1.00[AMR][1000 genomes]
rs73751604	1.00[AMR][1000 genomes]
rs73751606	1.00[AMR][1000 genomes]
rs73751607	1.00[AMR][1000 genomes]
rs7713019	1.00[AMR][1000 genomes]
rs7723762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36251800-36274400	Weak transcription	Brain Anterior Caudate	brain
2	chr5:36252600-36255000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:36254000-36255200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:36254000-36255200	Weak transcription	Liver	Liver
5	chr5:36254000-36274400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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