Variant report

Variant	rs59164775
Chromosome Location	chr5:36067253-36067254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr5:36066518-36067285	H1-hESC	embryonic stem cell:	n/a	chr5:36066697-36066705 chr5:36067230-36067239
2	E2F6	chr5:36066345-36067409	H1-hESC	embryonic stem cell:	n/a	chr5:36066971-36066978
3	CHD2	chr5:36066735-36067368	H1-hESC	embryonic stem cell:	n/a	n/a
4	CEBPB	chr5:36066972-36067379	H1-hESC	embryonic stem cell:	n/a	n/a
5	KAP1	chr5:36066577-36067405	HEK293	kidney:	n/a	n/a
6	POLR2A	chr5:36066562-36067313	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr5:36066023-36067457	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr5:36066481-36067311	H1-hESC	embryonic stem cell:	n/a	chr5:36066697-36066705 chr5:36067230-36067239
9	TAF1	chr5:36066491-36067268	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr5:36065251-36068009	SK-N-MC	brain:	n/a	n/a
11	YY1	chr5:36066749-36067283	H1-hESC	embryonic stem cell:	n/a	chr5:36066926-36066940
12	POLR2A	chr5:36066245-36067404	H1-hESC	embryonic stem cell:	n/a	n/a
13	ATF2	chr5:36067002-36067335	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr5:36066352-36067291	H1-hESC	embryonic stem cell:	n/a	n/a
15	USF1	chr5:36066834-36067276	H1-hESC	embryonic stem cell:	n/a	n/a
16	ZNF263	chr5:36066194-36067439	HEK293-T-REx	kidney:	n/a	chr5:36066565-36066586 chr5:36067056-36067065
17	GTF2F1	chr5:36066615-36067330	H1-hESC	embryonic stem cell:	n/a	n/a
18	YY1	chr5:36066818-36067323	H1-hESC	embryonic stem cell:	n/a	chr5:36066926-36066940
19	TAF1	chr5:36066173-36067348	H1-hESC	embryonic stem cell:	n/a	n/a
20	TBP	chr5:36066515-36067289	H1-hESC	embryonic stem cell:	n/a	n/a
21	ZNF143	chr5:36066564-36067580	H1-hESC	embryonic stem cell:	n/a	chr5:36066936-36066946
22	POLR2A	chr5:36066837-36067294	H1-hESC	embryonic stem cell:	n/a	n/a
23	SP1	chr5:36066846-36067383	H1-hESC	embryonic stem cell:	n/a	chr5:36067053-36067067
24	POLR2A	chr5:36066683-36067917	SK-N-MC	brain:	n/a	n/a
25	MXI1	chr5:36066330-36067650	H1-hESC	embryonic stem cell:	n/a	n/a
26	MAX	chr5:36066471-36067342	H1-hESC	embryonic stem cell:	n/a	chr5:36066697-36066705 chr5:36067230-36067239
27	SIN3A	chr5:36066342-36067317	H1-hESC	embryonic stem cell:	n/a	chr5:36067046-36067057
28	TEAD4	chr5:36066925-36067293	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
UGT3A2	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs155539	1.00[AMR][1000 genomes]
rs155540	1.00[AMR][1000 genomes]
rs155542	1.00[AMR][1000 genomes]
rs155545	1.00[AMR][1000 genomes]
rs155547	1.00[AMR][1000 genomes]
rs155548	1.00[AMR][1000 genomes]
rs155549	1.00[AMR][1000 genomes]
rs267752	1.00[AMR][1000 genomes]
rs267755	1.00[AMR][1000 genomes]
rs267756	1.00[AMR][1000 genomes]
rs267760	1.00[AMR][1000 genomes]
rs267761	1.00[AMR][1000 genomes]
rs267762	1.00[AMR][1000 genomes]
rs267763	1.00[AMR][1000 genomes]
rs267788	1.00[AMR][1000 genomes]
rs267791	1.00[AMR][1000 genomes]
rs267794	1.00[AMR][1000 genomes]
rs33614	1.00[AMR][1000 genomes]
rs33618	1.00[AMR][1000 genomes]
rs33675	1.00[AMR][1000 genomes]
rs33677	1.00[AMR][1000 genomes]
rs33680	1.00[AMR][1000 genomes]
rs33681	1.00[AMR][1000 genomes]
rs40029	1.00[AMR][1000 genomes]
rs40031	1.00[AMR][1000 genomes]
rs41113	1.00[AMR][1000 genomes]
rs41114	1.00[AMR][1000 genomes]
rs42213	1.00[AMR][1000 genomes]
rs423753	1.00[AMR][1000 genomes]
rs56135557	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56989767	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57273729	1.00[AMR][1000 genomes]
rs57579833	1.00[AMR][1000 genomes]
rs58168401	1.00[AMR][1000 genomes]
rs58457055	1.00[AMR][1000 genomes]
rs73076197	1.00[AMR][1000 genomes]
rs73076199	1.00[AMR][1000 genomes]
rs73078005	1.00[AMR][1000 genomes]
rs73078010	1.00[AMR][1000 genomes]
rs73078011	1.00[AMR][1000 genomes]
rs73748791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751604	1.00[AMR][1000 genomes]
rs73751606	1.00[AMR][1000 genomes]
rs73751607	1.00[AMR][1000 genomes]
rs73751624	1.00[AMR][1000 genomes]
rs7713019	1.00[AMR][1000 genomes]
rs7723762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36061400-36071000	Weak transcription	Dnd41	blood
2	chr5:36065000-36067400	Flanking Active TSS	Fetal Thymus	thymus
3	chr5:36066000-36067400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:36066000-36067400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:36066200-36067400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr5:36066200-36067400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr5:36066200-36067400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
8	chr5:36066200-36067600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:36066200-36067600	Enhancers	Fetal Heart	heart
10	chr5:36066400-36067400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr5:36066400-36067600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr5:36066400-36067600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:36066400-36068000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr5:36066600-36067400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
15	chr5:36066800-36067400	Bivalent Enhancer	Fetal Stomach	stomach
16	chr5:36067000-36067400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
17	chr5:36067000-36067400	Enhancers	Liver	Liver
18	chr5:36067000-36067400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
19	chr5:36067000-36067400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
20	chr5:36067000-36067400	Flanking Active TSS	Thymus	Thymus
21	chr5:36067000-36067600	Bivalent Enhancer	Fetal Intestine Small	intestine
22	chr5:36067000-36067800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:36067000-36070600	Weak transcription	Pancreas	Pancrea
24	chr5:36067200-36067400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
25	chr5:36067200-36067400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:36067200-36067400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr5:36067200-36067400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:36067200-36067400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
29	chr5:36067200-36067400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:36067200-36067600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr5:36067200-36067600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:36067200-36067600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr5:36067200-36067600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr5:36067200-36067600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
35	chr5:36067200-36067800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr5:36067200-36067800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr5:36067200-36067800	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr5:36067200-36067800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
39	chr5:36067200-36071800	Weak transcription	Spleen	Spleen
40	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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