Variant report

Variant	rs155542
Chromosome Location	chr5:36161675-36161676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36160015..36162178-chr5:36164182..36166735,3	K562	blood:
2	chr5:36150277..36153703-chr5:36154371..36162094,13	K562	blood:

Variant related genes	Relation type
ENSG00000164187	Chromatin interaction
ENSG00000145604	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs155539	1.00[AMR][1000 genomes]
rs155540	1.00[AMR][1000 genomes]
rs155545	1.00[AMR][1000 genomes]
rs155547	1.00[AMR][1000 genomes]
rs155548	1.00[AMR][1000 genomes]
rs155549	1.00[AMR][1000 genomes]
rs267752	1.00[AMR][1000 genomes]
rs267755	1.00[AMR][1000 genomes]
rs267756	1.00[AMR][1000 genomes]
rs267760	1.00[AMR][1000 genomes]
rs267761	1.00[AMR][1000 genomes]
rs267762	1.00[AMR][1000 genomes]
rs267763	1.00[AMR][1000 genomes]
rs267788	1.00[AMR][1000 genomes]
rs267791	1.00[AMR][1000 genomes]
rs267794	1.00[AMR][1000 genomes]
rs33614	1.00[AMR][1000 genomes]
rs33618	1.00[AMR][1000 genomes]
rs33675	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs33677	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs33680	1.00[AMR][1000 genomes]
rs33681	1.00[AMR][1000 genomes]
rs40029	1.00[AMR][1000 genomes]
rs40031	1.00[AMR][1000 genomes]
rs41113	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs41114	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs42213	1.00[AMR][1000 genomes]
rs423753	1.00[AMR][1000 genomes]
rs56135557	1.00[AMR][1000 genomes]
rs56989767	1.00[AMR][1000 genomes]
rs57273729	1.00[AMR][1000 genomes]
rs57579833	1.00[AMR][1000 genomes]
rs58168401	1.00[AMR][1000 genomes]
rs58457055	1.00[AMR][1000 genomes]
rs59164775	1.00[AMR][1000 genomes]
rs6890988	1.00[AMR][1000 genomes]
rs73076197	1.00[AMR][1000 genomes]
rs73076199	1.00[AMR][1000 genomes]
rs73078005	1.00[AMR][1000 genomes]
rs73078010	1.00[AMR][1000 genomes]
rs73078011	1.00[AMR][1000 genomes]
rs73748791	1.00[AMR][1000 genomes]
rs73751604	1.00[AMR][1000 genomes]
rs73751606	1.00[AMR][1000 genomes]
rs73751607	1.00[AMR][1000 genomes]
rs73751624	1.00[AMR][1000 genomes]
rs7713019	1.00[AMR][1000 genomes]
rs7723762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153200-36164000	Weak transcription	Colonic Mucosa	Colon
2	chr5:36153800-36162600	Strong transcription	H9 Cell Line	embryonic stem cell
3	chr5:36153800-36164000	Weak transcription	Pancreas	Pancrea
4	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:36154000-36162000	Genic enhancers	HepG2	liver
6	chr5:36154000-36162600	Genic enhancers	Fetal Intestine Large	intestine
7	chr5:36154000-36168200	Strong transcription	Primary T cells from cord blood	blood
8	chr5:36154000-36168200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:36154000-36175400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:36154000-36175600	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr5:36154000-36175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:36154200-36168400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr5:36154200-36179000	Strong transcription	A549	lung
15	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
17	chr5:36154400-36162400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:36154400-36164800	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:36154400-36175000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr5:36154400-36175200	Strong transcription	Thymus	Thymus
21	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
23	chr5:36154600-36163200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:36154600-36164000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr5:36154600-36168000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr5:36154600-36168200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:36154600-36176000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:36155000-36163600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr5:36155200-36176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:36155800-36166000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr5:36156000-36176400	Strong transcription	Primary B cells from cord blood	blood
32	chr5:36156400-36163800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:36156600-36175400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:36156600-36176000	Strong transcription	K562	blood
35	chr5:36156600-36178000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr5:36156800-36163600	Weak transcription	Right Ventricle	heart
37	chr5:36156800-36164400	Strong transcription	Fetal Kidney	kidney
38	chr5:36156800-36173600	Weak transcription	Psoas Muscle	Psoas
39	chr5:36156800-36175400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr5:36157000-36172600	Strong transcription	Fetal Lung	lung
41	chr5:36157200-36162000	Genic enhancers	Fetal Muscle Leg	muscle
42	chr5:36157400-36162400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:36157600-36164800	Strong transcription	Lung	lung
44	chr5:36157800-36169200	Strong transcription	NHLF	lung
45	chr5:36158000-36162800	Genic enhancers	Fetal Intestine Small	intestine
46	chr5:36158200-36161800	Genic enhancers	Dnd41	blood
47	chr5:36158200-36163000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr5:36158200-36164800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr5:36158200-36175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix

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