Variant report

Variant	rs267790
Chromosome Location	chr5:36076646-36076647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10512648	0.80[ASN][1000 genomes]
rs10941274	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12653480	0.89[AMR][1000 genomes]
rs12653497	0.89[AMR][1000 genomes]
rs12653691	0.89[AMR][1000 genomes]
rs12655033	0.80[ASN][1000 genomes]
rs12655052	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12655301	0.92[ASN][1000 genomes]
rs12657634	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs155547	0.82[AFR][1000 genomes]
rs155548	0.82[AFR][1000 genomes]
rs155549	0.82[AFR][1000 genomes]
rs16902727	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1908391	0.89[AMR][1000 genomes]
rs2013414	0.82[AMR][1000 genomes]
rs2270909	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs267752	0.82[AFR][1000 genomes]
rs267786	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267788	0.82[AFR][1000 genomes]
rs267791	0.82[AFR][1000 genomes]
rs28362652	0.80[ASN][1000 genomes]
rs28362653	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs33614	0.82[AFR][1000 genomes]
rs33680	0.82[AFR][1000 genomes]
rs33681	0.87[AFR][1000 genomes]
rs35071851	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35708472	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs42213	0.82[AFR][1000 genomes]
rs4869459	0.82[AMR][1000 genomes]
rs4869460	0.89[AMR][1000 genomes]
rs4869463	0.92[ASN][1000 genomes]
rs4869465	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869613	0.89[AMR][1000 genomes]
rs4869615	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71617744	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:36073000-36079400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:36074400-36079000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:36074400-36079400	Weak transcription	Dnd41	blood
6	chr5:36074400-36079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:36074400-36079600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:36074400-36079600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:36074400-36079600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:36074400-36082000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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