Variant report

Variant	rs4869615
Chromosome Location	chr5:36069879-36069880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXP2	chr5:36069834-36070222	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36069530..36071342-chr5:36073947..36076016,2	K562	blood:

Variant related genes	Relation type
UGT3A2	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10512648	0.89[JPT][hapmap]
rs10941274	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs12653480	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs12653497	0.92[AMR][1000 genomes]
rs12653691	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs12655033	0.89[JPT][hapmap];0.81[MEX][hapmap]
rs12655052	1.00[ASW][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes]
rs12655301	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12657634	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs16902727	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1908391	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs2013414	0.85[AMR][1000 genomes]
rs2270909	0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs267786	1.00[CEU][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs267790	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28362653	0.84[AMR][1000 genomes]
rs35071851	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35708472	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3804440	1.00[ASW][hapmap];0.81[MEX][hapmap]
rs4869459	1.00[ASW][hapmap];0.89[CHD][hapmap];0.85[AMR][1000 genomes]
rs4869460	0.92[AMR][1000 genomes]
rs4869463	0.82[ASN][1000 genomes]
rs4869465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4869611	1.00[CEU][hapmap]
rs4869613	1.00[CEU][hapmap];0.80[CHB][hapmap];0.92[AMR][1000 genomes]
rs4869622	1.00[ASW][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36061400-36071000	Weak transcription	Dnd41	blood
2	chr5:36067000-36070600	Weak transcription	Pancreas	Pancrea
3	chr5:36067200-36071800	Weak transcription	Spleen	Spleen
4	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:36067400-36071000	Weak transcription	Liver	Liver
6	chr5:36067800-36070800	Weak transcription	Fetal Thymus	thymus
7	chr5:36067800-36071000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:36067800-36071200	Weak transcription	Thymus	Thymus
9	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:36068000-36073400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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