Variant report

Variant	rs4869613
Chromosome Location	chr5:36056733-36056734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10941274	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs12653480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657634	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs16902727	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs16902780	1.00[AFR][1000 genomes]
rs1908391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013414	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267786	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs267790	0.89[AMR][1000 genomes]
rs35296363	1.00[AFR][1000 genomes]
rs35685853	1.00[AFR][1000 genomes]
rs3789759	1.00[AFR][1000 genomes]
rs3804440	1.00[AFR][1000 genomes]
rs4869459	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4869460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869465	0.92[AMR][1000 genomes]
rs4869611	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869615	1.00[CEU][hapmap];0.80[CHB][hapmap];0.92[AMR][1000 genomes]
rs4869622	1.00[AFR][1000 genomes]
rs61755301	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:36049400-36065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:36052200-36057200	Enhancers	Thymus	Thymus
7	chr5:36052400-36061200	Enhancers	Fetal Thymus	thymus
8	chr5:36053200-36059600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:36054400-36066200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:36055000-36059800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:36055200-36059200	Enhancers	Dnd41	blood
12	chr5:36055200-36059800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:36056600-36056800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:36056600-36066200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links