Variant report

Variant	rs16902780
Chromosome Location	chr5:36175787-36175788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36175359..36180718-chr5:36239202..36245572,9	K562	blood:
2	chr5:36170215..36174544-chr5:36175515..36177695,5	K562	blood:
3	chr5:36175359..36178197-chr5:36240518..36242976,3	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12653480	1.00[AFR][1000 genomes]
rs12653497	1.00[AFR][1000 genomes]
rs13181119	1.00[EUR][1000 genomes]
rs1908391	1.00[AFR][1000 genomes]
rs35296363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35338830	1.00[EUR][1000 genomes]
rs35418428	1.00[EUR][1000 genomes]
rs35685853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3789759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3804440	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4869460	1.00[AFR][1000 genomes]
rs4869613	1.00[AFR][1000 genomes]
rs4869622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61755301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:36154200-36179000	Strong transcription	A549	lung
4	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
6	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
8	chr5:36154600-36176000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:36155200-36176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:36156000-36176400	Strong transcription	Primary B cells from cord blood	blood
11	chr5:36156600-36176000	Strong transcription	K562	blood
12	chr5:36156600-36178000	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:36158200-36175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix
15	chr5:36158400-36182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr5:36158600-36176000	Strong transcription	Osteobl	bone
18	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:36159200-36175800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:36159800-36176000	Strong transcription	Primary hematopoietic stem cells	blood
22	chr5:36160000-36175800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:36161200-36175800	Strong transcription	HSMM	muscle
24	chr5:36161800-36184400	Strong transcription	Dnd41	blood
25	chr5:36162000-36176000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:36162200-36180600	Weak transcription	Stomach Mucosa	stomach
27	chr5:36162400-36183000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:36162400-36184400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:36162800-36177000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr5:36164800-36220800	Weak transcription	Gastric	stomach
32	chr5:36166600-36175800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:36166800-36181400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:36167200-36182800	Strong transcription	NH-A	brain
35	chr5:36169000-36182600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr5:36169200-36181800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr5:36169200-36193200	Weak transcription	Pancreas	Pancrea
38	chr5:36169400-36181800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr5:36169600-36182400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
41	chr5:36169800-36176000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr5:36170000-36175800	Strong transcription	GM12878-XiMat	blood
43	chr5:36170200-36182400	Strong transcription	HUVEC	blood vessel
44	chr5:36170600-36177800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr5:36171200-36175800	Strong transcription	Brain Germinal Matrix	brain
46	chr5:36171200-36175800	Strong transcription	NHEK	skin
47	chr5:36171200-36181200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr5:36172000-36185200	Weak transcription	Esophagus	oesophagus
50	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links