Variant report

Variant	rs35685853
Chromosome Location	chr5:36159615-36159616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36150277..36153703-chr5:36154371..36162094,13	K562	blood:
2	chr5:36159082..36161211-chr5:36169419..36172418,2	K562	blood:

Variant related genes	Relation type
ENSG00000164187	Chromatin interaction
ENSG00000145604	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12653480	1.00[AFR][1000 genomes]
rs12653497	1.00[AFR][1000 genomes]
rs13181119	1.00[EUR][1000 genomes]
rs16902780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1908391	1.00[AFR][1000 genomes]
rs33674	0.82[ASN][1000 genomes]
rs35296363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35338830	1.00[EUR][1000 genomes]
rs35418428	1.00[EUR][1000 genomes]
rs3789759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3804440	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4869460	1.00[AFR][1000 genomes]
rs4869613	1.00[AFR][1000 genomes]
rs4869622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61755301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153200-36160800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36153200-36164000	Weak transcription	Colonic Mucosa	Colon
3	chr5:36153800-36160800	Weak transcription	Gastric	stomach
4	chr5:36153800-36162600	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr5:36153800-36164000	Weak transcription	Pancreas	Pancrea
6	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:36154000-36160600	Weak transcription	Stomach Mucosa	stomach
8	chr5:36154000-36162000	Genic enhancers	HepG2	liver
9	chr5:36154000-36162600	Genic enhancers	Fetal Intestine Large	intestine
10	chr5:36154000-36168200	Strong transcription	Primary T cells from cord blood	blood
11	chr5:36154000-36168200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:36154000-36175400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:36154000-36175600	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr5:36154000-36175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:36154200-36168400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr5:36154200-36179000	Strong transcription	A549	lung
18	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
20	chr5:36154400-36162400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:36154400-36164800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:36154400-36175000	Strong transcription	Primary B cells from peripheral blood	blood
23	chr5:36154400-36175200	Strong transcription	Thymus	Thymus
24	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
26	chr5:36154600-36163200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:36154600-36164000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:36154600-36168000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr5:36154600-36168200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr5:36154600-36176000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:36154800-36161600	Weak transcription	Brain Substantia Nigra	brain
32	chr5:36155000-36163600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr5:36155200-36176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr5:36155800-36166000	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:36156000-36176400	Strong transcription	Primary B cells from cord blood	blood
36	chr5:36156400-36160000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr5:36156400-36160200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr5:36156400-36163800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr5:36156600-36175400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:36156600-36176000	Strong transcription	K562	blood
41	chr5:36156600-36178000	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr5:36156800-36159800	Strong transcription	Ovary	ovary
43	chr5:36156800-36160200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr5:36156800-36160800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr5:36156800-36160800	Weak transcription	Esophagus	oesophagus
46	chr5:36156800-36160800	Strong transcription	Fetal Muscle Trunk	muscle
47	chr5:36156800-36163600	Weak transcription	Right Ventricle	heart
48	chr5:36156800-36164400	Strong transcription	Fetal Kidney	kidney
49	chr5:36156800-36173600	Weak transcription	Psoas Muscle	Psoas
50	chr5:36156800-36175400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links