Variant report

Variant	rs33674
Chromosome Location	chr5:36153847-36153848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:36153628-36153975	Hela-S3	cervix:	n/a	n/a
2	EP300	chr5:36153835-36154274	HepG2	liver:	n/a	chr5:36154011-36154025
3	MAX	chr5:36153799-36154333	HepG2	liver:	n/a	n/a
4	FOXA1	chr5:36153676-36154311	HepG2	liver:	n/a	n/a
5	POLR2A	chr5:36153799-36154033	HepG2	liver:	n/a	n/a
6	NFIC	chr5:36153753-36154278	HepG2	liver:	n/a	n/a
7	RXRA	chr5:36153811-36154233	HepG2	liver:	n/a	chr5:36153898-36153920
8	SP1	chr5:36153782-36154200	HepG2	liver:	n/a	n/a
9	EP300	chr5:36153759-36154253	HepG2	liver:	n/a	chr5:36154011-36154025
10	CEBPZ	chr5:36153845-36153907	HepG2	liver:	n/a	n/a
11	MAFK	chr5:36153628-36154208	HepG2	liver:	n/a	chr5:36153647-36153658
12	HDAC2	chr5:36153815-36154244	HepG2	liver:	n/a	n/a
13	MAFF	chr5:36153608-36154217	HepG2	liver:	n/a	n/a
14	NR2F2	chr5:36153700-36154355	HepG2	liver:	n/a	n/a
15	FOXA2	chr5:36153549-36154472	HepG2	liver:	n/a	n/a
16	TEAD4	chr5:36153704-36154332	HepG2	liver:	n/a	n/a
17	MAFK	chr5:36153583-36154133	IMR90	lung:	n/a	chr5:36153647-36153658
18	NR2F2	chr5:36153588-36154375	HepG2	liver:	n/a	n/a
19	FOXA2	chr5:36153778-36154253	HepG2	liver:	n/a	n/a
20	RCOR1	chr5:36153821-36154167	HepG2	liver:	n/a	n/a
21	FOXA1	chr5:36153700-36154337	HepG2	liver:	n/a	n/a
22	FOXA1	chr5:36153760-36154299	HepG2	liver:	n/a	n/a
23	MYBL2	chr5:36153733-36154319	HepG2	liver:	n/a	n/a
24	MYBL2	chr5:36153752-36154302	HepG2	liver:	n/a	n/a
25	NFIC	chr5:36153836-36154252	HepG2	liver:	n/a	n/a
26	MAFK	chr5:36153602-36154240	HepG2	liver:	n/a	chr5:36153647-36153658
27	FOXA1	chr5:36153707-36154175	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36150467..36154483-chr5:36238242..36244873,13	K562	blood:
2	chr5:36150463..36155255-chr5:36239958..36244873,10	K562	blood:

Variant related genes	Relation type
RNU6-1305P	TF binding region
LMBRD2	TF binding region
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10941274	0.89[CHB][hapmap]
rs12655052	0.89[CHB][hapmap]
rs12657634	0.89[CHB][hapmap]
rs13181119	1.00[CEU][hapmap]
rs16902727	0.89[CHB][hapmap]
rs2270909	0.86[CHB][hapmap]
rs267786	0.89[CHB][hapmap]
rs35296363	0.83[ASN][1000 genomes]
rs35685853	0.82[ASN][1000 genomes]
rs3804440	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs4869622	1.00[CEU][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36148600-36154600	Active TSS	GM12878-XiMat	blood
2	chr5:36150600-36154000	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr5:36152400-36154000	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr5:36152400-36155000	Transcr. at gene 5' and 3'	Dnd41	blood
5	chr5:36152600-36154000	Flanking Active TSS	Liver	Liver
6	chr5:36152800-36154000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:36152800-36154000	Flanking Active TSS	Fetal Brain Male	brain
8	chr5:36152800-36154200	Enhancers	Spleen	Spleen
9	chr5:36152800-36155600	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
10	chr5:36153000-36154000	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:36153000-36154000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:36153000-36154000	Enhancers	Stomach Mucosa	stomach
13	chr5:36153000-36154400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:36153000-36154400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr5:36153000-36154400	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
16	chr5:36153000-36154600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:36153000-36156200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr5:36153000-36156400	Weak transcription	Aorta	Aorta
19	chr5:36153000-36156400	Transcr. at gene 5' and 3'	HSMM	muscle
20	chr5:36153200-36154000	Enhancers	Primary T cells fromperipheralblood	blood
21	chr5:36153200-36154000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr5:36153200-36154000	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr5:36153200-36154000	Enhancers	Rectal Smooth Muscle	rectum
24	chr5:36153200-36154200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:36153200-36154200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr5:36153200-36154200	Enhancers	Brain Cingulate Gyrus	brain
27	chr5:36153200-36154200	Active TSS	Right Ventricle	heart
28	chr5:36153200-36154400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:36153200-36154400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr5:36153200-36154400	Genic enhancers	Brain Anterior Caudate	brain
31	chr5:36153200-36154400	Enhancers	Left Ventricle	heart
32	chr5:36153200-36154400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr5:36153200-36154400	Enhancers	Small Intestine	intestine
34	chr5:36153200-36154600	Enhancers	Colon Smooth Muscle	Colon
35	chr5:36153200-36154800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr5:36153200-36155000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr5:36153200-36156400	Weak transcription	Esophagus	oesophagus
38	chr5:36153200-36157400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr5:36153200-36157600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr5:36153200-36158000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:36153200-36160800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr5:36153200-36164000	Weak transcription	Colonic Mucosa	Colon
43	chr5:36153400-36154000	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr5:36153400-36154000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:36153400-36154000	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
46	chr5:36153400-36154000	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
47	chr5:36153400-36154000	Enhancers	Right Atrium	heart
48	chr5:36153400-36154000	Transcr. at gene 5' and 3'	A549	lung
49	chr5:36153400-36154000	Flanking Active TSS	HMEC	breast
50	chr5:36153400-36154000	Flanking Active TSS	NHDF-Ad	bronchial

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