Variant report

Variant	rs35071851
Chromosome Location	chr5:36098156-36098157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10512648	0.89[ASN][1000 genomes]
rs10941274	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12655033	0.89[ASN][1000 genomes]
rs12655052	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12655301	0.89[ASN][1000 genomes]
rs12657634	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16902727	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2270909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs267786	0.91[ASN][1000 genomes]
rs267790	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28362652	0.89[ASN][1000 genomes]
rs28362653	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35708472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869463	0.89[ASN][1000 genomes]
rs4869465	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4869615	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71617744	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36090600-36099600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:36090800-36107000	Weak transcription	HSMMtube	muscle
3	chr5:36092200-36106000	Weak transcription	Primary B cells from cord blood	blood
4	chr5:36092800-36116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:36093600-36104000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:36093600-36107600	Weak transcription	Psoas Muscle	Psoas
7	chr5:36095600-36103000	Weak transcription	HSMM	muscle
8	chr5:36096600-36128600	Weak transcription	Fetal Brain Male	brain
9	chr5:36096800-36104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:36097200-36104000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:36097600-36098200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:36098000-36099200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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