Variant report

Variant	rs34165875
Chromosome Location	chr5:36079227-36079228
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36078923..36080165-chr5:36089864..36090534,3	MCF-7	breast:
2	chr5:35928008..35930588-chr5:36078739..36080969,2	MCF-7	breast:
3	chr5:36073255..36075394-chr5:36079180..36080886,2	K562	blood:
4	chr5:36078946..36081295-chr5:36081423..36084387,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1113073	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12513526	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12522542	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12654974	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12655763	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12658867	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13156321	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13163292	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13177876	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13180445	0.93[AFR][1000 genomes]
rs13181789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1353269	1.00[AFR][1000 genomes]
rs1393158	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs144694	0.82[EUR][1000 genomes]
rs145190	0.81[EUR][1000 genomes]
rs1501817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs155550	0.81[EUR][1000 genomes]
rs155551	0.81[EUR][1000 genomes]
rs17342682	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17343598	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs173611	0.81[EUR][1000 genomes]
rs1827369	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1827371	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs198353	0.82[EUR][1000 genomes]
rs2012367	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs267766	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs267787	0.82[EUR][1000 genomes]
rs267792	0.83[EUR][1000 genomes]
rs34783816	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35746165	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36064347	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3898058	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3913488	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4021314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs40499	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4415106	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869468	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4869614	0.81[AFR][1000 genomes]
rs766064	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7705825	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7705975	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7706216	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36073000-36079400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36074400-36079400	Weak transcription	Dnd41	blood
4	chr5:36074400-36079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:36074400-36079600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:36074400-36079600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:36074400-36079600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:36074400-36082000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:36077800-36079400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:36077800-36079400	Enhancers	Brain Cingulate Gyrus	brain
11	chr5:36078200-36079800	Enhancers	Brain Substantia Nigra	brain
12	chr5:36078600-36079400	Enhancers	Brain Angular Gyrus	brain
13	chr5:36078600-36079400	Weak transcription	Spleen	Spleen
14	chr5:36078600-36079800	Enhancers	Brain Hippocampus Middle	brain
15	chr5:36078800-36079600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:36079000-36079400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:36079000-36079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:36079200-36079400	Enhancers	Brain Inferior Temporal Lobe	brain

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