Variant report

Variant	rs13180445
Chromosome Location	chr5:36041898-36041899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12513526	0.93[AFR][1000 genomes]
rs1287267	0.97[ASN][1000 genomes]
rs1287270	0.95[ASN][1000 genomes]
rs1287272	0.99[ASN][1000 genomes]
rs1287273	0.99[ASN][1000 genomes]
rs1287274	1.00[ASN][1000 genomes]
rs1287278	1.00[ASN][1000 genomes]
rs13181789	0.93[AFR][1000 genomes]
rs1353269	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501817	0.93[AFR][1000 genomes]
rs1585703	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2012367	0.93[AFR][1000 genomes]
rs34165875	0.93[AFR][1000 genomes]
rs34783816	0.93[AFR][1000 genomes]
rs4021314	0.93[AFR][1000 genomes]
rs4415106	0.93[AFR][1000 genomes]
rs4869614	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs688946	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36031200-36047800	Weak transcription	Fetal Thymus	thymus
2	chr5:36040600-36042000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:36041200-36042000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:36041200-36042000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:36041600-36042000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:36041600-36048800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:36041800-36042000	Enhancers	Fetal Lung	lung
10	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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