Variant report

Variant	rs1585703
Chromosome Location	chr5:36040741-36040742
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1287267	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1287269	0.86[EUR][1000 genomes]
rs1287270	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1287271	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs1287272	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1287273	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1287274	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287278	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180445	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1353269	1.00[ASN][1000 genomes]
rs4869614	0.88[ASN][1000 genomes]
rs688946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36031200-36047800	Weak transcription	Fetal Thymus	thymus
2	chr5:36035000-36041800	Weak transcription	Fetal Lung	lung
3	chr5:36036600-36040800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:36037200-36040800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:36037200-36040800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:36037600-36041200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:36040200-36041800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr5:36040600-36041400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:36040600-36041600	Enhancers	Fetal Muscle Leg	muscle
10	chr5:36040600-36041800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:36040600-36041800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:36040600-36041800	Enhancers	Fetal Intestine Large	intestine
13	chr5:36040600-36041800	Enhancers	Fetal Intestine Small	intestine
14	chr5:36040600-36041800	Enhancers	Lung	lung
15	chr5:36040600-36041800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr5:36040600-36042000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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