Variant report

Variant	rs1287272
Chromosome Location	chr5:36049999-36050000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1287267	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1287269	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1287270	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1287271	0.85[CEU][hapmap];0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1287273	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287274	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1287278	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13180445	0.99[ASN][1000 genomes]
rs1353269	0.99[ASN][1000 genomes]
rs1585703	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4869614	0.88[ASN][1000 genomes]
rs688946	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:36046800-36051000	Weak transcription	Dnd41	blood
6	chr5:36047800-36050600	Strong transcription	Fetal Thymus	thymus
7	chr5:36048400-36050800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:36049400-36065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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