Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36043264..36045787-chr5:36046536..36048667,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12513526	1.00[AFR][1000 genomes]
rs12658867	0.86[ASW][hapmap]
rs1287267	1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs1287270	0.95[ASN][1000 genomes]
rs1287272	0.99[ASN][1000 genomes]
rs1287273	0.99[ASN][1000 genomes]
rs1287274	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1287278	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13180445	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181789	1.00[AFR][1000 genomes]
rs1501817	1.00[AFR][1000 genomes]
rs1585703	1.00[ASN][1000 genomes]
rs17342682	0.81[CEU][hapmap]
rs17343598	0.86[ASW][hapmap]
rs2012367	0.81[CEU][hapmap];1.00[AFR][1000 genomes]
rs34165875	1.00[AFR][1000 genomes]
rs34783816	1.00[AFR][1000 genomes]
rs3898058	0.84[AFR][1000 genomes]
rs4021314	1.00[AFR][1000 genomes]
rs4415106	1.00[AFR][1000 genomes]
rs4869614	0.81[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs688946	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041600-36048800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:36046800-36051000	Weak transcription	Dnd41	blood
7	chr5:36047200-36048600	Enhancers	Spleen	Spleen
8	chr5:36047800-36050600	Strong transcription	Fetal Thymus	thymus

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