Variant report

Variant	rs17342682
Chromosome Location	chr5:36064980-36064981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36063741..36065789-chr5:36066505..36068738,2	K562	blood:
2	chr5:36058460..36062314-chr5:36063254..36065361,3	K562	blood:

Variant related genes	Relation type
ENSG00000168671	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1113073	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12513526	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs12654974	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12655763	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs12658867	0.92[CEU][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap]
rs13156321	0.96[CEU][hapmap];0.84[JPT][hapmap]
rs13163292	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13177876	0.96[CEU][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs13181789	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1353269	0.81[CEU][hapmap]
rs1393158	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs144694	0.82[CEU][hapmap]
rs1501817	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17343598	0.92[CEU][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap]
rs1827369	0.96[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1827371	0.96[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2012367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs267758	0.82[CEU][hapmap]
rs267766	0.92[CEU][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap]
rs267787	0.81[CEU][hapmap]
rs34165875	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35746165	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4021314	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs40499	0.80[EUR][1000 genomes]
rs4415106	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs4869614	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs766064	0.96[CEU][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs7705825	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7705975	0.82[EUR][1000 genomes]
rs7706216	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:36049400-36065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:36054400-36066200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:36056600-36066200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:36061200-36065200	Weak transcription	Thymus	Thymus
7	chr5:36061400-36071000	Weak transcription	Dnd41	blood
8	chr5:36061800-36065400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:36063600-36065200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:36064400-36065000	Enhancers	Fetal Thymus	thymus
11	chr5:36064600-36065800	Weak transcription	H1 Cell Line	embryonic stem cell

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