Variant report

Variant	rs13177876
Chromosome Location	chr5:36124514-36124515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36122607..36124912-chr5:36126539..36128667,2	K562	blood:
2	chr5:36123649..36125423-chr5:36149838..36151339,2	K562	blood:
3	chr5:36123951..36126776-chr5:36136546..36138211,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1113073	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12513526	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522542	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654974	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12655763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658867	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163292	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181789	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1393158	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs144694	0.85[CEU][hapmap]
rs1501817	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17342682	0.96[CEU][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs17343598	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827369	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1827371	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2012367	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2455316	0.81[EUR][1000 genomes]
rs267754	0.81[EUR][1000 genomes]
rs267758	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs267766	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs267787	0.84[CEU][hapmap]
rs33615	0.81[EUR][1000 genomes]
rs34165875	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34783816	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35746165	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36064347	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3898058	1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes]
rs3913488	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4021314	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs40499	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4415106	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869468	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869614	0.96[CEU][hapmap]
rs766064	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705825	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705975	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7706216	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
3	nsv4795	chr5:36106115-36150407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36096600-36128600	Weak transcription	Fetal Brain Male	brain
2	chr5:36100200-36127600	Weak transcription	Pancreas	Pancrea
3	chr5:36100200-36139400	Weak transcription	Gastric	stomach
4	chr5:36100800-36127600	Weak transcription	Spleen	Spleen
5	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
6	chr5:36102600-36129200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:36102600-36141400	Weak transcription	Hela-S3	cervix
8	chr5:36103000-36128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:36103600-36147200	Weak transcription	HUVEC	blood vessel
10	chr5:36104800-36139400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:36105400-36128000	Weak transcription	Lung	lung
12	chr5:36105600-36125600	Weak transcription	Fetal Heart	heart
13	chr5:36105600-36142400	Weak transcription	NH-A	brain
14	chr5:36106200-36129200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr5:36106200-36139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:36108200-36126000	Weak transcription	Right Ventricle	heart
17	chr5:36108200-36127400	Weak transcription	HSMMtube	muscle
18	chr5:36108200-36127600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:36108200-36127600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr5:36108200-36127800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr5:36108200-36129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:36108200-36139000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:36108200-36139200	Weak transcription	Esophagus	oesophagus
24	chr5:36108200-36139400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:36108200-36139400	Weak transcription	Aorta	Aorta
26	chr5:36108400-36125800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:36108400-36139800	Weak transcription	Brain Substantia Nigra	brain
28	chr5:36108400-36150600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr5:36108600-36139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:36108600-36142800	Weak transcription	Fetal Kidney	kidney
31	chr5:36108800-36127800	Weak transcription	Brain Germinal Matrix	brain
32	chr5:36108800-36134400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr5:36109200-36127800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr5:36109400-36140000	Weak transcription	NHLF	lung
35	chr5:36110800-36134800	Weak transcription	Brain Hippocampus Middle	brain
36	chr5:36112000-36129200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:36112600-36127000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr5:36113400-36127800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:36114200-36128000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:36114200-36128400	Weak transcription	Fetal Lung	lung
41	chr5:36114200-36129000	Weak transcription	K562	blood
42	chr5:36116400-36128400	Weak transcription	Brain Angular Gyrus	brain
43	chr5:36116400-36134800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr5:36116800-36127400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr5:36117400-36135800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:36117400-36140000	Weak transcription	Small Intestine	intestine
47	chr5:36117400-36150200	Weak transcription	Colon Smooth Muscle	Colon
48	chr5:36117600-36127400	Weak transcription	Fetal Intestine Small	intestine
49	chr5:36117600-36127600	Weak transcription	Fetal Stomach	stomach
50	chr5:36117600-36127800	Weak transcription	Psoas Muscle	Psoas

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