Variant report

Variant	rs2012367
Chromosome Location	chr5:36066357-36066358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1113073	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12513526	0.96[CEU][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes]
rs12654974	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12655763	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12658867	0.96[CEU][hapmap];0.84[JPT][hapmap]
rs13156321	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13163292	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13177876	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13180445	0.93[AFR][1000 genomes]
rs13181789	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1353269	0.81[CEU][hapmap];1.00[AFR][1000 genomes]
rs1393158	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs144694	0.86[CEU][hapmap]
rs1501817	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17342682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17343598	0.96[CEU][hapmap];0.84[JPT][hapmap]
rs1827369	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1827371	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs267758	0.85[CEU][hapmap]
rs267766	0.96[CEU][hapmap];0.84[JPT][hapmap]
rs267787	0.85[CEU][hapmap]
rs34165875	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34783816	1.00[AFR][1000 genomes]
rs35746165	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3898058	0.84[AFR][1000 genomes]
rs3913488	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4021314	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs40499	0.81[EUR][1000 genomes]
rs4415106	0.96[CEU][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes]
rs4869614	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs766064	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7705825	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7705975	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7706216	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36061400-36071000	Weak transcription	Dnd41	blood
2	chr5:36065000-36067400	Flanking Active TSS	Fetal Thymus	thymus
3	chr5:36065800-36066400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr5:36065800-36067200	Active TSS	H1 Cell Line	embryonic stem cell
5	chr5:36066000-36066400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:36066000-36067200	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr5:36066000-36067400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:36066000-36067400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:36066200-36066400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr5:36066200-36066400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:36066200-36066400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:36066200-36066400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:36066200-36066400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr5:36066200-36066400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:36066200-36066400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr5:36066200-36066400	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr5:36066200-36066600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:36066200-36066600	Bivalent Enhancer	Brain Germinal Matrix	brain
19	chr5:36066200-36066600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr5:36066200-36066600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
21	chr5:36066200-36066600	Active TSS	Thymus	Thymus
22	chr5:36066200-36066800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
23	chr5:36066200-36067000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:36066200-36067000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
25	chr5:36066200-36067000	Enhancers	Pancreas	Pancrea
26	chr5:36066200-36067200	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr5:36066200-36067200	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr5:36066200-36067200	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr5:36066200-36067200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:36066200-36067200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:36066200-36067200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:36066200-36067200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr5:36066200-36067200	Bivalent/Poised TSS	Fetal Kidney	kidney
34	chr5:36066200-36067200	Enhancers	Spleen	Spleen
35	chr5:36066200-36067400	Active TSS	H9 Cell Line	embryonic stem cell
36	chr5:36066200-36067400	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr5:36066200-36067400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
38	chr5:36066200-36067600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:36066200-36067600	Enhancers	Fetal Heart	heart

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