Variant report

Variant	rs17343598
Chromosome Location	chr5:36103905-36103906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36102224..36105150-chr5:36106081..36108767,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1113073	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12513526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522542	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654974	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12655763	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658867	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156321	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163292	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13177876	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181789	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1353269	0.86[ASW][hapmap]
rs1393158	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs144694	0.82[CEU][hapmap]
rs1501817	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17342682	0.92[CEU][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap]
rs1827369	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1827371	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2012367	0.96[CEU][hapmap];0.84[JPT][hapmap]
rs267758	0.82[CEU][hapmap];0.83[GIH][hapmap]
rs267766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs267787	0.81[CEU][hapmap]
rs34165875	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34783816	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35746165	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36064347	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3898058	1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes]
rs3913488	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4021314	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs40499	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4415106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869468	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869614	0.92[CEU][hapmap]
rs766064	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705825	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705975	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7706216	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36090800-36107000	Weak transcription	HSMMtube	muscle
2	chr5:36092200-36106000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:36092800-36116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:36093600-36104000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:36093600-36107600	Weak transcription	Psoas Muscle	Psoas
6	chr5:36096600-36128600	Weak transcription	Fetal Brain Male	brain
7	chr5:36096800-36104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:36097200-36104000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr5:36098200-36104200	Weak transcription	Primary T cells from cord blood	blood
10	chr5:36098200-36106800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:36098600-36104000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:36098600-36104000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr5:36098600-36104200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:36098600-36106200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:36098600-36106800	Weak transcription	Left Ventricle	heart
16	chr5:36098600-36107400	Weak transcription	Right Ventricle	heart
17	chr5:36098600-36107800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:36098800-36104000	Weak transcription	Brain Angular Gyrus	brain
19	chr5:36098800-36113200	Weak transcription	Fetal Stomach	stomach
20	chr5:36099000-36104000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:36099000-36104200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:36099000-36116800	Weak transcription	Fetal Intestine Small	intestine
23	chr5:36100200-36107800	Weak transcription	Aorta	Aorta
24	chr5:36100200-36127600	Weak transcription	Pancreas	Pancrea
25	chr5:36100200-36139400	Weak transcription	Gastric	stomach
26	chr5:36100400-36104000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr5:36100600-36104000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr5:36100600-36106800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr5:36100800-36106000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:36100800-36107600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:36100800-36127600	Weak transcription	Spleen	Spleen
32	chr5:36101000-36104000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr5:36101000-36104000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr5:36101000-36104000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:36101000-36104000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr5:36101000-36105800	Weak transcription	Brain Anterior Caudate	brain
37	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
38	chr5:36101400-36104400	Weak transcription	Placenta	Placenta
39	chr5:36101400-36107600	Weak transcription	Small Intestine	intestine
40	chr5:36102000-36104000	Weak transcription	Fetal Kidney	kidney
41	chr5:36102000-36118400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr5:36102200-36106000	Weak transcription	Fetal Muscle Leg	muscle
43	chr5:36102200-36108600	Strong transcription	Adipose Nuclei	Adipose
44	chr5:36102200-36118400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr5:36102400-36104000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr5:36102400-36104000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr5:36102400-36104000	Weak transcription	Brain Hippocampus Middle	brain
48	chr5:36102400-36104000	Weak transcription	Fetal Intestine Large	intestine
49	chr5:36102400-36104000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr5:36102400-36104000	Weak transcription	NHDF-Ad	bronchial

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