Variant report

Variant	rs35746165
Chromosome Location	chr5:36072054-36072055
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:36072043-36072060	Gliobla	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UGT3A2-2	chr5:36071893-36072181	NONHSAT101021

Variant related genes	Relation type
UGT3A2	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1113073	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513526	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12522542	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654974	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655763	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12658867	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13156321	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13163292	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177876	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181789	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393158	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs144694	0.82[EUR][1000 genomes]
rs1501817	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17342682	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17343598	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1827369	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827371	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012367	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs267766	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267787	0.81[EUR][1000 genomes]
rs267792	0.81[EUR][1000 genomes]
rs34165875	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34783816	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36064347	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3898058	0.90[ASN][1000 genomes]
rs3913488	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4021314	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs40499	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4415106	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4869468	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs766064	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705825	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705975	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706216	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:36068000-36073400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:36071800-36072200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr5:36071800-36072200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:36071800-36072200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr5:36071800-36072200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:36071800-36072200	Enhancers	Ovary	ovary
9	chr5:36071800-36072200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr5:36071800-36072200	Enhancers	Spleen	Spleen
11	chr5:36071800-36073400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr5:36072000-36072200	Enhancers	Liver	Liver
13	chr5:36072000-36072200	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:36072000-36072200	Enhancers	Dnd41	blood
15	chr5:36072000-36073600	Weak transcription	Thymus	Thymus
16	chr5:36072000-36073800	Weak transcription	Fetal Thymus	thymus

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