Variant report

Variant	rs145190
Chromosome Location	chr5:36090074-36090075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36060736..36061425-chr5:36090017..36091123,3	MCF-7	breast:
2	chr5:35963141..35964337-chr5:36089811..36090751,6	MCF-7	breast:
3	chr5:36078923..36080165-chr5:36089864..36090534,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1113073	0.81[EUR][1000 genomes]
rs12513526	0.83[CEU][hapmap]
rs12654974	0.81[EUR][1000 genomes]
rs12655763	0.86[CEU][hapmap]
rs12658867	0.82[CEU][hapmap]
rs13156321	0.86[CEU][hapmap]
rs13163292	0.82[EUR][1000 genomes]
rs13177876	0.85[CEU][hapmap]
rs13181789	0.81[EUR][1000 genomes]
rs1393158	0.80[EUR][1000 genomes]
rs144694	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1501817	0.82[EUR][1000 genomes]
rs155550	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs155551	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342682	0.82[CEU][hapmap]
rs17343598	0.82[CEU][hapmap]
rs173611	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827369	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs1827371	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs198353	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2012367	0.86[CEU][hapmap]
rs2455316	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs267754	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs267758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs267764	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs267766	0.81[CEU][hapmap]
rs267787	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs267792	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33615	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34165875	0.81[EUR][1000 genomes]
rs4021314	0.82[EUR][1000 genomes]
rs40499	0.80[EUR][1000 genomes]
rs4415106	0.83[CEU][hapmap]
rs4869614	0.83[CEU][hapmap]
rs766064	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs7705825	0.81[EUR][1000 genomes]
rs7705975	0.82[EUR][1000 genomes]
rs7706216	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36089600-36090600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:36089600-36090600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:36089800-36090200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:36089800-36090600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:36089800-36090600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:36089800-36090600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:36090000-36090200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:36090000-36090400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:36090000-36090600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links