Variant report

Variant	rs10512641
Chromosome Location	chr5:36220792-36220793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36220213..36223106-chr5:36238566..36243203,4	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10452459	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11952545	1.00[EUR][1000 genomes]
rs11953540	1.00[EUR][1000 genomes]
rs11959495	1.00[EUR][1000 genomes]
rs11960054	1.00[EUR][1000 genomes]
rs12109571	1.00[EUR][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	1.00[EUR][1000 genomes]
rs16902710	1.00[EUR][1000 genomes]
rs16902726	1.00[EUR][1000 genomes]
rs16902747	1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902829	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902858	1.00[EUR][1000 genomes]
rs16902910	1.00[EUR][1000 genomes]
rs16902936	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2362981	1.00[EUR][1000 genomes]
rs3853244	1.00[EUR][1000 genomes]
rs3853245	1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs56815690	1.00[EUR][1000 genomes]
rs57472443	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58131800	1.00[EUR][1000 genomes]
rs59754678	1.00[EUR][1000 genomes]
rs60083069	1.00[EUR][1000 genomes]
rs61209349	1.00[EUR][1000 genomes]
rs61656343	1.00[EUR][1000 genomes]
rs6451255	1.00[EUR][1000 genomes]
rs6451267	1.00[EUR][1000 genomes]
rs6860896	1.00[EUR][1000 genomes]
rs6866069	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867280	1.00[EUR][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6872883	1.00[EUR][1000 genomes]
rs6874771	1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	1.00[EUR][1000 genomes]
rs6881555	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6886540	1.00[EUR][1000 genomes]
rs6887103	1.00[EUR][1000 genomes]
rs6894587	1.00[EUR][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	1.00[EUR][1000 genomes]
rs6898451	1.00[EUR][1000 genomes]
rs73081933	1.00[EUR][1000 genomes]
rs73081942	1.00[EUR][1000 genomes]
rs73081945	1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs73751620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7702340	1.00[EUR][1000 genomes]
rs7705125	1.00[EUR][1000 genomes]
rs7709624	1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	1.00[EUR][1000 genomes]
rs7723314	1.00[EUR][1000 genomes]
rs7725596	1.00[EUR][1000 genomes]
rs7730301	1.00[EUR][1000 genomes]
rs7730829	1.00[EUR][1000 genomes]
rs7733484	1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36164800-36220800	Weak transcription	Gastric	stomach
2	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
3	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
7	chr5:36190000-36220800	Weak transcription	Spleen	Spleen
8	chr5:36190200-36220800	Weak transcription	Esophagus	oesophagus
9	chr5:36190400-36220800	Weak transcription	Lung	lung
10	chr5:36190600-36227400	Weak transcription	Thymus	Thymus
11	chr5:36191800-36230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:36192000-36224200	Weak transcription	Aorta	Aorta
13	chr5:36192600-36227800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:36193600-36220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:36193600-36220800	Weak transcription	Pancreas	Pancrea
16	chr5:36196600-36236600	Weak transcription	GM12878-XiMat	blood
17	chr5:36197800-36220800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr5:36197800-36224800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:36198000-36238400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:36200000-36229600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:36200200-36220800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:36200200-36239400	Weak transcription	Fetal Brain Male	brain
23	chr5:36201200-36222000	Weak transcription	A549	lung
24	chr5:36201200-36230200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:36201400-36240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:36202800-36220800	Weak transcription	Right Ventricle	heart
27	chr5:36203800-36220800	Weak transcription	Brain Substantia Nigra	brain
28	chr5:36203800-36227000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:36204000-36222600	Weak transcription	Fetal Heart	heart
30	chr5:36204000-36227000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:36205200-36226800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr5:36205800-36221800	Weak transcription	Colon Smooth Muscle	Colon
33	chr5:36207200-36220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr5:36209000-36222800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:36210400-36223000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:36210400-36223200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr5:36210600-36222000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr5:36210600-36222600	Weak transcription	NHLF	lung
39	chr5:36210600-36225000	Weak transcription	NHEK	skin
40	chr5:36210600-36225200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr5:36211400-36221600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:36211800-36220800	Weak transcription	Fetal Intestine Small	intestine
43	chr5:36212400-36226800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr5:36213200-36220800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr5:36213200-36224800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr5:36213200-36225000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:36213200-36230200	Weak transcription	Brain Germinal Matrix	brain
48	chr5:36213200-36237000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr5:36213400-36220800	Weak transcription	Primary T cells from cord blood	blood
50	chr5:36213400-36227600	Weak transcription	NH-A	brain

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