Variant report

Variant	rs73751622
Chromosome Location	chr5:36225830-36225831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:233357419..233358336-chr5:36225391..36225893,2	MCF-7	breast:
2	chr5:36223256..36225953-chr5:36698495..36700466,2	MCF-7	breast:
3	chr5:36200225..36203141-chr5:36225275..36227713,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10452459	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10512641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11952545	1.00[EUR][1000 genomes]
rs11953540	1.00[EUR][1000 genomes]
rs11959495	1.00[EUR][1000 genomes]
rs11960054	1.00[EUR][1000 genomes]
rs12109571	1.00[EUR][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	1.00[EUR][1000 genomes]
rs16902710	1.00[EUR][1000 genomes]
rs16902726	1.00[EUR][1000 genomes]
rs16902747	1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902858	1.00[EUR][1000 genomes]
rs16902910	1.00[EUR][1000 genomes]
rs16902936	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2362981	1.00[EUR][1000 genomes]
rs3853244	1.00[EUR][1000 genomes]
rs3853245	1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs56815690	1.00[EUR][1000 genomes]
rs57472443	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58131800	1.00[EUR][1000 genomes]
rs59754678	1.00[EUR][1000 genomes]
rs60083069	1.00[EUR][1000 genomes]
rs61209349	1.00[EUR][1000 genomes]
rs61656343	1.00[EUR][1000 genomes]
rs6451255	1.00[EUR][1000 genomes]
rs6451267	1.00[EUR][1000 genomes]
rs6860896	1.00[EUR][1000 genomes]
rs6866069	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867280	1.00[EUR][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6872883	1.00[EUR][1000 genomes]
rs6874771	1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	1.00[EUR][1000 genomes]
rs6881555	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6886540	1.00[EUR][1000 genomes]
rs6887103	1.00[EUR][1000 genomes]
rs6894587	1.00[EUR][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	1.00[EUR][1000 genomes]
rs6898451	1.00[EUR][1000 genomes]
rs73081933	1.00[EUR][1000 genomes]
rs73081942	1.00[EUR][1000 genomes]
rs73081945	1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs73751620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7702340	1.00[EUR][1000 genomes]
rs7705125	1.00[EUR][1000 genomes]
rs7709624	1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	1.00[EUR][1000 genomes]
rs7723314	1.00[EUR][1000 genomes]
rs7725596	1.00[EUR][1000 genomes]
rs7730301	1.00[EUR][1000 genomes]
rs7730829	1.00[EUR][1000 genomes]
rs7733484	1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
2	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
3	chr5:36190600-36227400	Weak transcription	Thymus	Thymus
4	chr5:36191800-36230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:36192600-36227800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:36196600-36236600	Weak transcription	GM12878-XiMat	blood
7	chr5:36198000-36238400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:36200000-36229600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:36200200-36239400	Weak transcription	Fetal Brain Male	brain
10	chr5:36201200-36230200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:36201400-36240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:36203800-36227000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:36204000-36227000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:36205200-36226800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:36212400-36226800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr5:36213200-36230200	Weak transcription	Brain Germinal Matrix	brain
17	chr5:36213200-36237000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:36213400-36227600	Weak transcription	NH-A	brain
19	chr5:36214800-36226200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr5:36215200-36236600	Weak transcription	Small Intestine	intestine
21	chr5:36215800-36237800	Weak transcription	HMEC	breast
22	chr5:36216800-36228400	Weak transcription	HUVEC	blood vessel
23	chr5:36219000-36226600	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:36219000-36227000	Strong transcription	HepG2	liver
25	chr5:36219200-36226600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:36219200-36226800	Strong transcription	Adipose Nuclei	Adipose
27	chr5:36219400-36226000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr5:36219400-36226600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:36219600-36230000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:36219800-36227000	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr5:36220200-36226600	Strong transcription	Brain Anterior Caudate	brain
32	chr5:36220400-36226000	Strong transcription	Brain Cingulate Gyrus	brain
33	chr5:36220400-36226200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr5:36220600-36226600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:36220800-36226200	Strong transcription	Primary T cells from cord blood	blood
36	chr5:36221000-36226600	Strong transcription	Liver	Liver
37	chr5:36221000-36230200	Weak transcription	K562	blood
38	chr5:36221200-36230000	Weak transcription	HSMMtube	muscle
39	chr5:36221200-36230400	Weak transcription	Lung	lung
40	chr5:36221200-36238800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:36221400-36226000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr5:36221400-36226800	Weak transcription	Right Ventricle	heart
43	chr5:36221400-36229600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr5:36221600-36226800	Weak transcription	Esophagus	oesophagus
45	chr5:36221600-36230000	Weak transcription	Pancreas	Pancrea
46	chr5:36221600-36230200	Weak transcription	Gastric	stomach
47	chr5:36221600-36232600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr5:36221600-36235600	Weak transcription	Fetal Kidney	kidney
49	chr5:36221600-36236200	Weak transcription	Fetal Intestine Small	intestine
50	chr5:36221600-36238600	Weak transcription	Fetal Stomach	stomach

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