Variant report

Variant	rs3849785
Chromosome Location	chr5:36184284-36184285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10461961	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10461962	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10461964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10461965	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10512642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10512648	1.00[AFR][1000 genomes]
rs10941282	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10941283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10941284	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12054662	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12054682	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12054958	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12055219	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12652746	1.00[AFR][1000 genomes]
rs12654720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12655033	1.00[AFR][1000 genomes]
rs12656102	0.87[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12657110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12658779	0.87[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1364013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1364014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1364015	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902793	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902801	1.00[AFR][1000 genomes]
rs16902812	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902813	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902827	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902836	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902845	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902911	0.86[CHB][hapmap];1.00[AMR][1000 genomes]
rs28362652	1.00[AFR][1000 genomes]
rs3849787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3900936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4869470	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4869471	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4869472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4869624	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4869627	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4869628	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4869629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4869630	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4869633	0.86[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4869637	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs56815690	0.85[ASN][1000 genomes]
rs59754678	0.83[ASN][1000 genomes]
rs6886540	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs6898451	0.83[ASN][1000 genomes]
rs73081933	0.85[ASN][1000 genomes]
rs878608	0.87[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9637790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs991033	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs991034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
4	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
6	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:36161800-36184400	Strong transcription	Dnd41	blood
10	chr5:36162400-36184400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:36164800-36220800	Weak transcription	Gastric	stomach
13	chr5:36169200-36193200	Weak transcription	Pancreas	Pancrea
14	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
15	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:36172000-36185200	Weak transcription	Esophagus	oesophagus
17	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
18	chr5:36172400-36189400	Weak transcription	Fetal Intestine Small	intestine
19	chr5:36172400-36189600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:36174200-36195200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:36174400-36190800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:36175000-36189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:36175000-36191200	Weak transcription	Aorta	Aorta
24	chr5:36175000-36191600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:36175200-36184400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:36175200-36189600	Weak transcription	Spleen	Spleen
27	chr5:36175200-36202400	Weak transcription	Right Ventricle	heart
28	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:36175400-36189600	Weak transcription	Lung	lung
30	chr5:36175400-36190600	Weak transcription	Ovary	ovary
31	chr5:36175600-36195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr5:36176600-36184400	Strong transcription	HSMM	muscle
34	chr5:36176800-36184400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:36177000-36184400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:36177000-36184400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:36177200-36184400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr5:36177200-36184400	Strong transcription	Adipose Nuclei	Adipose
39	chr5:36177800-36186000	Weak transcription	Brain Germinal Matrix	brain
40	chr5:36178600-36184400	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:36179000-36189400	Weak transcription	Thymus	Thymus
42	chr5:36179000-36189600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:36179000-36189600	Weak transcription	Fetal Stomach	stomach
44	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
46	chr5:36179200-36199800	Weak transcription	Colon Smooth Muscle	Colon
47	chr5:36179200-36210400	Weak transcription	Fetal Kidney	kidney
48	chr5:36179200-36212600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:36180000-36184400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr5:36180400-36194800	Weak transcription	Stomach Smooth Muscle	stomach

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