Variant report

Variant	rs4869637
Chromosome Location	chr5:36276150-36276151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10461961	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10461962	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10461964	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10461965	0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10512642	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10512648	1.00[AFR][1000 genomes]
rs10941282	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10941283	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10941284	0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12054662	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12054682	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12054958	1.00[ASW][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12055219	0.81[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12652746	1.00[AFR][1000 genomes]
rs12654720	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12655033	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs12656102	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12657110	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12658779	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1364013	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1364014	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1364015	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16902793	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16902797	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16902801	1.00[AFR][1000 genomes]
rs16902812	1.00[ASW][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.86[MEX][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16902813	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16902827	1.00[ASW][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16902836	0.86[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16902845	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16902871	1.00[ASW][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16902911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16902928	0.89[MEX][hapmap]
rs2202006	0.89[MEX][hapmap]
rs28362652	1.00[AFR][1000 genomes]
rs2937535	1.00[AFR][1000 genomes]
rs3849785	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs3849787	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs3900936	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869470	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869471	1.00[ASW][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869472	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869624	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869627	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869628	0.91[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869629	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869630	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4869633	0.92[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56815690	0.93[ASN][1000 genomes]
rs59754678	0.95[ASN][1000 genomes]
rs6886540	1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[JPT][hapmap];0.97[ASN][1000 genomes]
rs6898451	0.95[ASN][1000 genomes]
rs73081933	0.93[ASN][1000 genomes]
rs878608	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9637790	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs991033	0.92[AMR][1000 genomes]
rs991034	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36261600-36277000	Weak transcription	Pancreas	Pancrea
2	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
4	chr5:36271200-36276800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:36272600-36281800	Weak transcription	Brain Substantia Nigra	brain
6	chr5:36273600-36279800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:36274800-36276800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:36274800-36276800	Weak transcription	Adipose Nuclei	Adipose
9	chr5:36274800-36276800	Weak transcription	Aorta	Aorta
10	chr5:36274800-36282800	Weak transcription	Brain Anterior Caudate	brain
11	chr5:36275000-36276600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:36275200-36281600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:36275400-36277000	Weak transcription	Liver	Liver

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