Variant report

Variant	rs10462072
Chromosome Location	chr5:44398277-44398278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1384445	0.81[ASN][1000 genomes]
rs1905189	0.98[ASN][1000 genomes]
rs1905190	0.98[ASN][1000 genomes]
rs1905191	0.81[ASN][1000 genomes]
rs2330552	0.96[ASN][1000 genomes]
rs4352602	0.90[CEU][hapmap]
rs4866899	0.83[ASN][1000 genomes]
rs4866900	0.83[ASN][1000 genomes]
rs7449207	0.90[ASN][1000 genomes]
rs7710996	0.89[CEU][hapmap]
rs7712213	0.83[ASN][1000 genomes]
rs9292907	0.91[ASN][1000 genomes]
rs9292908	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9885120	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44395200-44447400	Weak transcription	Fetal Lung	lung
2	chr5:44395600-44403000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:44396600-44403000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:44397200-44399400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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