Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10462072	0.83[ASN][1000 genomes]
rs12516346	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1384445	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384453	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1384454	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1482684	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1482690	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1482691	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1905189	0.83[ASN][1000 genomes]
rs1905190	0.83[ASN][1000 genomes]
rs1905191	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1905192	0.80[ASN][1000 genomes]
rs2330552	0.84[ASN][1000 genomes]
rs4352602	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4866776	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4866899	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58761628	0.81[ASN][1000 genomes]
rs6451763	0.81[ASN][1000 genomes]
rs6864776	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6879342	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7449207	0.86[ASN][1000 genomes]
rs7703171	0.82[EUR][1000 genomes]
rs7710996	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7712213	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9292907	0.84[ASN][1000 genomes]
rs9292908	0.86[ASN][1000 genomes]
rs9885120	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1024923	chr5:44439853-44528314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4866900	PLCXD3	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44395200-44447400	Weak transcription	Fetal Lung	lung
2	chr5:44442000-44446800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:44443800-44452200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:44444000-44447800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:44445000-44453800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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