Variant report

Variant	rs7703171
Chromosome Location	chr5:44441175-44441176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10079222	0.91[EUR][1000 genomes]
rs10461756	0.94[ASN][1000 genomes]
rs10461757	0.87[ASN][1000 genomes]
rs10512860	0.91[EUR][1000 genomes]
rs10941667	0.87[ASN][1000 genomes]
rs10941668	0.87[ASN][1000 genomes]
rs11950046	0.87[ASN][1000 genomes]
rs12516346	0.93[EUR][1000 genomes]
rs1351633	0.91[EUR][1000 genomes]
rs1384447	0.87[ASN][1000 genomes]
rs1384450	0.87[ASN][1000 genomes]
rs1384453	0.95[EUR][1000 genomes]
rs1384454	0.95[EUR][1000 genomes]
rs1482663	0.90[EUR][1000 genomes]
rs1482665	0.91[EUR][1000 genomes]
rs1482684	0.95[EUR][1000 genomes]
rs1482690	0.95[EUR][1000 genomes]
rs1482691	0.95[EUR][1000 genomes]
rs1825237	0.86[ASN][1000 genomes]
rs1905191	0.96[EUR][1000 genomes]
rs1905192	0.92[EUR][1000 genomes]
rs2086655	0.89[ASN][1000 genomes]
rs2128434	0.87[ASN][1000 genomes]
rs2128435	0.86[ASN][1000 genomes]
rs4866776	0.93[EUR][1000 genomes]
rs4866777	0.83[ASN][1000 genomes]
rs4866899	0.96[EUR][1000 genomes]
rs4866900	0.82[EUR][1000 genomes]
rs4866902	0.82[ASN][1000 genomes]
rs4866903	0.83[ASN][1000 genomes]
rs4866904	0.83[ASN][1000 genomes]
rs4866905	0.91[EUR][1000 genomes]
rs58761628	0.92[EUR][1000 genomes]
rs6451763	0.91[EUR][1000 genomes]
rs6864776	0.94[EUR][1000 genomes]
rs6871730	0.85[ASN][1000 genomes]
rs6879342	0.95[EUR][1000 genomes]
rs6893590	0.93[ASN][1000 genomes]
rs6897963	0.91[EUR][1000 genomes]
rs747187	0.87[ASN][1000 genomes]
rs7707044	0.81[EUR][1000 genomes]
rs7709753	0.85[ASN][1000 genomes]
rs7710996	0.93[EUR][1000 genomes]
rs7712213	0.95[EUR][1000 genomes]
rs8180484	0.85[ASN][1000 genomes]
rs983940	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1024923	chr5:44439853-44528314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44395200-44447400	Weak transcription	Fetal Lung	lung
2	chr5:44435200-44443600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:44435800-44441200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:44441000-44441800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:44441000-44442000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links