Variant report

Variant	rs10463642
Chromosome Location	chr5:112019879-112019880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112018949..112022294-chr5:112089786..112092475,3	MCF-7	breast:
2	chr5:112017960..112020508-chr5:112020777..112023084,3	K562	blood:
3	chr5:112015432..112017657-chr5:112019656..112021443,2	K562	blood:
4	chr5:112003283..112005720-chr5:112018708..112021018,2	MCF-7	breast:
5	chr5:112015114..112017797-chr5:112018212..112021156,3	K562	blood:
6	chr5:112018915..112020508-chr5:112020831..112023084,2	K562	blood:
7	chr5:112018990..112022293-chr5:112024063..112027716,5	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10051624	0.93[ASN][1000 genomes]
rs10072068	0.96[ASN][1000 genomes]
rs10075281	0.84[ASN][1000 genomes]
rs10075323	0.84[ASN][1000 genomes]
rs10075377	0.84[ASN][1000 genomes]
rs10213844	0.93[ASN][1000 genomes]
rs10463643	0.83[EUR][1000 genomes]
rs10477483	0.97[ASN][1000 genomes]
rs11241182	0.86[ASN][1000 genomes]
rs11749632	0.83[ASN][1000 genomes]
rs11749701	0.86[ASN][1000 genomes]
rs12332692	0.98[ASN][1000 genomes]
rs12513787	0.93[ASN][1000 genomes]
rs12658609	0.94[ASN][1000 genomes]
rs13156251	0.96[ASN][1000 genomes]
rs1441367	0.95[ASN][1000 genomes]
rs1441375	0.84[EUR][1000 genomes]
rs1530256	0.95[ASN][1000 genomes]
rs1661035	0.81[EUR][1000 genomes]
rs1661036	0.81[EUR][1000 genomes]
rs17285505	0.98[ASN][1000 genomes]
rs1866924	0.96[ASN][1000 genomes]
rs1968557	0.95[ASN][1000 genomes]
rs2019720	0.80[ASN][1000 genomes]
rs2099810	0.95[ASN][1000 genomes]
rs468179	0.82[EUR][1000 genomes]
rs4705559	0.87[ASN][1000 genomes]
rs4705573	0.84[ASN][1000 genomes]
rs4705610	0.80[ASN][1000 genomes]
rs6862050	0.93[ASN][1000 genomes]
rs6893949	0.81[ASN][1000 genomes]
rs7704618	0.87[ASN][1000 genomes]
rs7727738	0.98[ASN][1000 genomes]
rs953916	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112014400-112020200	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:112016400-112022600	Enhancers	NHDF-Ad	bronchial
3	chr5:112017400-112020200	Weak transcription	Psoas Muscle	Psoas
4	chr5:112017600-112020000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:112017600-112020400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:112018000-112020200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:112018400-112020600	Weak transcription	Fetal Brain Female	brain
8	chr5:112018800-112020000	Weak transcription	Osteobl	bone
9	chr5:112018800-112024200	Weak transcription	K562	blood
10	chr5:112019400-112020800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:112019600-112020000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:112019600-112020000	Bivalent Enhancer	Dnd41	blood
13	chr5:112019600-112020000	Flanking Active TSS	GM12878-XiMat	blood
14	chr5:112019600-112020400	Enhancers	Stomach Smooth Muscle	stomach
15	chr5:112019600-112020800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:112019600-112020800	Enhancers	Brain Angular Gyrus	brain
17	chr5:112019600-112020800	Enhancers	Brain Anterior Caudate	brain
18	chr5:112019600-112020800	Enhancers	Brain Cingulate Gyrus	brain
19	chr5:112019600-112020800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr5:112019600-112020800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:112019600-112020800	Enhancers	Right Atrium	heart
22	chr5:112019600-112021000	Enhancers	Primary B cells from peripheral blood	blood
23	chr5:112019600-112021000	Enhancers	Rectal Smooth Muscle	rectum
24	chr5:112019600-112021200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:112019600-112021200	Enhancers	Brain Germinal Matrix	brain
26	chr5:112019600-112021200	Enhancers	Fetal Muscle Leg	muscle
27	chr5:112019600-112021600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:112019600-112021800	Enhancers	HSMM	muscle
29	chr5:112019600-112022000	Enhancers	Ovary	ovary
30	chr5:112019600-112022200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr5:112019600-112022600	Enhancers	Fetal Heart	heart
32	chr5:112019600-112022600	Enhancers	NHLF	lung
33	chr5:112019800-112020400	Enhancers	Primary B cells from cord blood	blood
34	chr5:112019800-112020400	Flanking Active TSS	HSMMtube	muscle
35	chr5:112019800-112020800	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links