Variant report

Variant	rs11749632
Chromosome Location	chr5:112006815-112006816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10051624	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10072068	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10073398	0.82[EUR][1000 genomes]
rs10076641	0.85[EUR][1000 genomes]
rs10213844	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10463642	0.83[ASN][1000 genomes]
rs10477483	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11241182	0.83[EUR][1000 genomes]
rs11241184	0.83[EUR][1000 genomes]
rs11749701	0.82[EUR][1000 genomes]
rs11954856	0.83[EUR][1000 genomes]
rs12332692	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12513787	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12513804	0.88[EUR][1000 genomes]
rs12658609	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12659119	0.81[EUR][1000 genomes]
rs12719151	0.90[EUR][1000 genomes]
rs13156251	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1441367	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1465910	0.86[EUR][1000 genomes]
rs1530256	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17285505	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1816769	0.82[EUR][1000 genomes]
rs1866924	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1968557	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2020383	0.82[EUR][1000 genomes]
rs2099810	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2289484	0.81[EUR][1000 genomes]
rs2431242	0.82[EUR][1000 genomes]
rs2707763	0.81[EUR][1000 genomes]
rs2900066	0.85[EUR][1000 genomes]
rs35130225	0.82[EUR][1000 genomes]
rs3846716	0.81[EUR][1000 genomes]
rs4099181	0.84[EUR][1000 genomes]
rs4705559	0.81[EUR][1000 genomes]
rs4705815	0.92[EUR][1000 genomes]
rs4705816	0.92[EUR][1000 genomes]
rs62364017	0.85[EUR][1000 genomes]
rs6594643	0.85[EUR][1000 genomes]
rs6594644	0.84[EUR][1000 genomes]
rs6862050	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6867243	0.83[EUR][1000 genomes]
rs6893949	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6894351	0.86[EUR][1000 genomes]
rs6898133	0.81[EUR][1000 genomes]
rs7704618	0.81[EUR][1000 genomes]
rs7727738	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs861674	0.87[EUR][1000 genomes]
rs9326862	0.84[EUR][1000 genomes]
rs9326863	0.88[EUR][1000 genomes]
rs953916	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs971517	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112004800-112007800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:112005200-112007400	Enhancers	Brain Germinal Matrix	brain
3	chr5:112006200-112007800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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