Variant report

Variant	rs1465910
Chromosome Location	chr5:112045831-112045832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112044064..112046268-chr5:112246769..112248546,2	K562	blood:
2	chr15:90744214..90744739-chr5:112045563..112046063,2	NB4	blood:
3	chr5:112041577..112049243-chr5:112069735..112074802,8	K562	blood:
4	chr5:111887498..111890102-chr5:112044744..112046649,2	MCF-7	breast:
5	chr5:112041486..112046402-chr5:112068342..112076365,12	K562	blood:

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction
ENSG00000185033	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10051624	0.81[EUR][1000 genomes]
rs10073398	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10075281	0.80[EUR][1000 genomes]
rs10075323	0.80[EUR][1000 genomes]
rs10075377	0.80[EUR][1000 genomes]
rs10076641	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10213844	0.81[EUR][1000 genomes]
rs10463643	0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs11241182	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11241183	0.81[EUR][1000 genomes]
rs11241184	0.87[EUR][1000 genomes]
rs11241185	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs11749632	0.86[EUR][1000 genomes]
rs11749701	0.85[EUR][1000 genomes]
rs11954856	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12513787	0.80[EUR][1000 genomes]
rs12513804	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12518091	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs12656359	0.81[EUR][1000 genomes]
rs12658609	0.82[EUR][1000 genomes]
rs12659119	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12719151	0.85[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1441375	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1661035	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1661036	0.99[ASN][1000 genomes]
rs1816769	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1974786	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2019720	0.81[EUR][1000 genomes]
rs2020383	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2289484	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2431239	0.80[EUR][1000 genomes]
rs2431241	0.82[CEU][hapmap]
rs2431242	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2431512	0.85[CEU][hapmap]
rs2439589	0.80[EUR][1000 genomes]
rs2439591	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2546106	0.85[CEU][hapmap]
rs2546108	0.89[CEU][hapmap]
rs2546117	0.80[EUR][1000 genomes]
rs2707763	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs28578275	0.81[EUR][1000 genomes]
rs2900066	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2901844	0.80[EUR][1000 genomes]
rs2909786	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs2909787	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs2909958	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs35130225	0.91[EUR][1000 genomes]
rs351771	0.85[CHB][hapmap]
rs35414976	0.80[EUR][1000 genomes]
rs3846716	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs396321	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4099181	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41115	0.85[CHB][hapmap]
rs411356	0.85[CHB][hapmap]
rs414098	0.89[CEU][hapmap]
rs42427	0.85[CHB][hapmap]
rs464002	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs465899	0.85[CHB][hapmap]
rs467033	0.85[CEU][hapmap]
rs468179	0.99[ASN][1000 genomes]
rs4705486	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs4705559	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4705573	0.80[EUR][1000 genomes]
rs4705608	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs4705609	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705610	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4705624	0.81[EUR][1000 genomes]
rs4705815	0.85[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705816	0.85[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs544243	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs56335290	0.88[ASN][1000 genomes]
rs569940	0.86[EUR][1000 genomes]
rs62364017	0.88[EUR][1000 genomes]
rs6594643	0.85[CEU][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6594644	0.93[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6594646	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6862050	0.81[EUR][1000 genomes]
rs6864688	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6867243	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6879057	0.81[EUR][1000 genomes]
rs6893949	0.81[EUR][1000 genomes]
rs6894351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6898133	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7704618	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs861674	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9326862	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9326863	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs953916	0.86[EUR][1000 genomes]
rs9647582	0.81[EUR][1000 genomes]
rs9647583	0.81[EUR][1000 genomes]
rs971517	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112042600-112046200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr5:112043000-112046000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:112043000-112048200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:112044200-112046600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:112044200-112046600	Weak transcription	Gastric	stomach
6	chr5:112044200-112047000	Enhancers	Primary B cells from peripheral blood	blood
7	chr5:112044200-112049400	Weak transcription	Esophagus	oesophagus
8	chr5:112044400-112046000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:112044400-112046200	Enhancers	Stomach Mucosa	stomach
10	chr5:112044400-112046800	Enhancers	Spleen	Spleen
11	chr5:112044400-112047000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:112044400-112049200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr5:112044400-112049800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr5:112044600-112048000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:112044800-112046000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:112044800-112046000	Enhancers	Adipose Nuclei	Adipose
17	chr5:112044800-112046000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:112044800-112046000	Enhancers	Fetal Kidney	kidney
19	chr5:112044800-112046200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr5:112044800-112046200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr5:112044800-112046200	Enhancers	Fetal Stomach	stomach
22	chr5:112044800-112046400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr5:112044800-112046800	Weak transcription	Brain Substantia Nigra	brain
24	chr5:112044800-112046800	Enhancers	Fetal Lung	lung
25	chr5:112044800-112047400	Enhancers	Primary T cells fromperipheralblood	blood
26	chr5:112044800-112047400	Enhancers	Fetal Thymus	thymus
27	chr5:112044800-112047400	Enhancers	Thymus	Thymus
28	chr5:112044800-112047600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr5:112044800-112047800	Enhancers	Brain Angular Gyrus	brain
30	chr5:112044800-112049400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:112044800-112050200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr5:112044800-112052200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr5:112044800-112058000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:112044800-112058800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr5:112045000-112046000	Flanking Active TSS	Fetal Brain Male	brain
36	chr5:112045000-112046000	Genic enhancers	Fetal Intestine Small	intestine
37	chr5:112045000-112046000	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr5:112045000-112046400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr5:112045000-112046400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:112045000-112046600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr5:112045000-112046800	Enhancers	HepG2	liver
42	chr5:112045000-112047000	Enhancers	Fetal Heart	heart
43	chr5:112045000-112047200	Enhancers	Right Ventricle	heart
44	chr5:112045000-112048000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr5:112045000-112048000	Enhancers	K562	blood
46	chr5:112045000-112049600	Enhancers	Psoas Muscle	Psoas
47	chr5:112045200-112046000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr5:112045200-112046000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr5:112045200-112046200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr5:112045200-112046200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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