Variant report

Variant	rs10464285
Chromosome Location	chr7:16341525-16341526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:16340786-16341582	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16332474..16335082-chr7:16341108..16343730,3	K562	blood:
2	chr7:16335290..16339651-chr7:16341311..16343633,4	K562	blood:

Variant related genes	Relation type
ISPD	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10238993	0.92[EUR][1000 genomes]
rs10251171	0.92[EUR][1000 genomes]
rs10259276	0.87[EUR][1000 genomes]
rs10260543	0.89[EUR][1000 genomes]
rs12699776	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17361889	1.00[YRI][hapmap]
rs17362810	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17460723	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1921838	0.89[EUR][1000 genomes]
rs2107588	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2107589	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2158486	0.89[EUR][1000 genomes]
rs2158491	0.92[EUR][1000 genomes]
rs2189733	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2189735	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2389596	0.90[EUR][1000 genomes]
rs2389597	0.81[EUR][1000 genomes]
rs4537216	0.90[EUR][1000 genomes]
rs4719464	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4721487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56076119	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56399830	0.89[EUR][1000 genomes]
rs59440007	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60710809	0.88[EUR][1000 genomes]
rs61694712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62440455	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62440456	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62441091	0.88[EUR][1000 genomes]
rs62441879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62441882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62441888	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62441911	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62441913	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62441915	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62441917	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62441918	0.90[EUR][1000 genomes]
rs62441921	0.90[EUR][1000 genomes]
rs62441925	0.88[EUR][1000 genomes]
rs7805439	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16313600-16348200	Weak transcription	Gastric	stomach
2	chr7:16333400-16349000	Weak transcription	Psoas Muscle	Psoas
3	chr7:16335400-16343800	Weak transcription	K562	blood
4	chr7:16339800-16342400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:16341200-16342200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:16341200-16342200	Weak transcription	Fetal Lung	lung

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