Variant report

Variant	rs17460723
Chromosome Location	chr7:16346139-16346140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16333754..16335349-chr7:16345715..16348508,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10238993	0.80[EUR][1000 genomes]
rs10251171	0.80[EUR][1000 genomes]
rs10464285	0.88[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12699776	0.82[EUR][1000 genomes]
rs17362810	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2107587	0.92[EUR][1000 genomes]
rs2107588	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2107589	0.83[EUR][1000 genomes]
rs2158491	0.81[EUR][1000 genomes]
rs2189733	0.84[EUR][1000 genomes]
rs2189735	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4719464	0.83[EUR][1000 genomes]
rs4721487	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56076119	0.84[EUR][1000 genomes]
rs58011154	0.83[AFR][1000 genomes]
rs61694712	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62441879	0.81[EUR][1000 genomes]
rs62441882	0.83[EUR][1000 genomes]
rs62441888	0.83[EUR][1000 genomes]
rs62441911	0.83[EUR][1000 genomes]
rs62441913	0.81[EUR][1000 genomes]
rs62441915	0.81[EUR][1000 genomes]
rs62441917	0.81[EUR][1000 genomes]
rs7805439	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17460723	SOSTDC1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16313600-16348200	Weak transcription	Gastric	stomach
2	chr7:16333400-16349000	Weak transcription	Psoas Muscle	Psoas
3	chr7:16343800-16347600	Strong transcription	K562	blood

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