Variant report

Variant	rs10466461
Chromosome Location	chr11:36188967-36188968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12275025	1.00[AMR][1000 genomes]
rs12277126	1.00[AMR][1000 genomes]
rs12280774	1.00[AMR][1000 genomes]
rs12291701	1.00[AMR][1000 genomes]
rs28483655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36172600-36190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36179600-36193000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:36184400-36189200	Weak transcription	Pancreas	Pancrea
4	chr11:36184400-36220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:36184800-36206200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:36185200-36189000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:36185200-36190200	Weak transcription	Brain Substantia Nigra	brain
8	chr11:36185200-36192200	Weak transcription	Fetal Intestine Small	intestine
9	chr11:36185200-36203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:36185200-36207800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:36186000-36191000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:36186200-36189200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:36186200-36189800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:36186400-36199800	Weak transcription	HSMMtube	muscle
15	chr11:36186400-36207600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:36186600-36190000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:36186600-36196800	Weak transcription	NHEK	skin
18	chr11:36186600-36206000	Weak transcription	HSMM	muscle
19	chr11:36187200-36192200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:36187800-36189000	Weak transcription	Fetal Stomach	stomach
21	chr11:36187800-36196800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:36187800-36197200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:36188000-36190800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:36188000-36192800	Weak transcription	Fetal Lung	lung
25	chr11:36188000-36192800	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:36188000-36213600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:36188200-36190600	Weak transcription	Fetal Heart	heart
28	chr11:36188200-36193200	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:36188600-36193200	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links