Variant report

Variant	rs28483655
Chromosome Location	chr11:36226073-36226074
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10466461	1.00[AMR][1000 genomes]
rs12275025	1.00[AMR][1000 genomes]
rs12277126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280774	1.00[AMR][1000 genomes]
rs12291701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36208600-36231600	Weak transcription	HMEC	breast
2	chr11:36216600-36231600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:36217800-36226400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:36218000-36233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:36218200-36227000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:36218200-36233000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:36218400-36233000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:36218600-36227000	Weak transcription	HUVEC	blood vessel
10	chr11:36218600-36232800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:36218800-36230200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:36218800-36230400	Weak transcription	Pancreas	Pancrea
13	chr11:36219200-36227000	Weak transcription	Brain Substantia Nigra	brain
14	chr11:36219200-36232800	Weak transcription	Fetal Lung	lung
15	chr11:36219200-36248600	Weak transcription	Ovary	ovary
16	chr11:36220200-36226400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:36220200-36231600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:36220400-36226400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:36220400-36226600	Weak transcription	Fetal Intestine Large	intestine
20	chr11:36220400-36228600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:36220400-36231400	Weak transcription	NHEK	skin
22	chr11:36220600-36226800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:36220600-36233200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:36220600-36233600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:36220600-36241600	Weak transcription	HSMM	muscle
26	chr11:36221200-36226600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:36221200-36231800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:36221200-36233400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:36221400-36231600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:36221400-36235200	Weak transcription	Fetal Intestine Small	intestine
31	chr11:36221400-36248800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:36221800-36226800	Enhancers	Brain Germinal Matrix	brain
33	chr11:36222000-36239800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:36222200-36234600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:36222200-36235000	Weak transcription	Esophagus	oesophagus
36	chr11:36222800-36248800	Weak transcription	HSMMtube	muscle
37	chr11:36223000-36233200	Weak transcription	Brain Anterior Caudate	brain
38	chr11:36223400-36232600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:36224000-36226600	Weak transcription	Fetal Brain Male	brain
40	chr11:36224200-36226600	Weak transcription	Fetal Brain Female	brain
41	chr11:36224200-36230200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
42	chr11:36224800-36226600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:36225600-36233000	Weak transcription	Fetal Muscle Leg	muscle
44	chr11:36225800-36228000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links