Variant report

Variant	rs10466508
Chromosome Location	chr11:9159072-9159073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9108004..9116385-chr11:9156452..9162678,21	MCF-7	breast:
2	chr11:9109700..9116224-chr11:9155740..9163743,14	MCF-7	breast:
3	chr11:9104308..9106078-chr11:9156890..9159293,2	MCF-7	breast:
4	chr11:8983863..8986997-chr11:9158044..9162292,6	MCF-7	breast:
5	chr11:9041862..9044730-chr11:9157486..9160225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213538	Chromatin interaction
ENSG00000175356	Chromatin interaction
ENSG00000175348	Chromatin interaction
ENSG00000264984	Chromatin interaction
ENSG00000254860	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1039209	0.85[AMR][1000 genomes]
rs10466509	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11042184	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12273976	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12285553	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12286174	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12291263	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7113828	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9113600-9159800	Weak transcription	Right Ventricle	heart
2	chr11:9134800-9161200	Weak transcription	Fetal Brain Male	brain
3	chr11:9136400-9159200	Weak transcription	Brain Anterior Caudate	brain
4	chr11:9142400-9163000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:9142600-9159200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:9142600-9175000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:9143400-9159200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:9143400-9161200	Weak transcription	Aorta	Aorta
9	chr11:9144400-9161200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:9146400-9159200	Weak transcription	K562	blood
11	chr11:9148400-9159200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:9150600-9160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:9151800-9160800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:9151800-9175800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr11:9152000-9159800	Weak transcription	Liver	Liver
16	chr11:9152200-9160600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:9152600-9160200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:9152800-9159600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:9152800-9175800	Strong transcription	Fetal Muscle Leg	muscle
20	chr11:9153000-9159600	Weak transcription	Spleen	Spleen
21	chr11:9153000-9160200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:9153000-9179800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:9153200-9159200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:9153600-9160600	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:9153600-9164400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:9153800-9159200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:9154200-9160000	Weak transcription	Left Ventricle	heart
28	chr11:9154600-9160000	Strong transcription	HSMM	muscle
29	chr11:9154600-9160600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:9155000-9163000	Weak transcription	Psoas Muscle	Psoas
31	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:9155600-9161200	Weak transcription	Fetal Kidney	kidney
33	chr11:9156000-9159200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:9156000-9163000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:9156400-9159200	Weak transcription	Esophagus	oesophagus
36	chr11:9156800-9167200	Strong transcription	Placenta	Placenta
37	chr11:9157000-9159600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:9157000-9160000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:9157000-9180000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:9157200-9159600	Strong transcription	Osteobl	bone
41	chr11:9157200-9159800	Strong transcription	NHLF	lung
42	chr11:9157400-9160800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:9157800-9159200	Weak transcription	Right Atrium	heart
44	chr11:9158000-9159600	Weak transcription	NH-A	brain
45	chr11:9158000-9183200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:9158200-9159200	Strong transcription	NHDF-Ad	bronchial
47	chr11:9158400-9159200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:9158400-9159200	Strong transcription	Primary B cells from cord blood	blood
49	chr11:9158400-9159400	Enhancers	Fetal Thymus	thymus
50	chr11:9158400-9159400	Enhancers	Thymus	Thymus

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