Variant report

Variant	rs12286174
Chromosome Location	chr11:9175153-9175154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10466508	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10466509	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11042198	0.85[AMR][1000 genomes]
rs11042204	0.85[AMR][1000 genomes]
rs11042209	0.85[AMR][1000 genomes]
rs12273976	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275447	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs12285553	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290377	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs12291263	1.00[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv526778	chr11:9159739-9185077	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9151800-9175800	Strong transcription	Fetal Muscle Trunk	muscle
2	chr11:9152800-9175800	Strong transcription	Fetal Muscle Leg	muscle
3	chr11:9153000-9179800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:9157000-9180000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:9158000-9183200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:9159000-9175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:9159600-9179400	Strong transcription	Primary T cells from cord blood	blood
9	chr11:9159800-9183400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:9160000-9177200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:9160200-9175600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:9160400-9175600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:9160600-9175400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:9161200-9175400	Strong transcription	Fetal Lung	lung
15	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
16	chr11:9161400-9175600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:9161400-9179200	Strong transcription	Fetal Stomach	stomach
18	chr11:9161400-9181000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:9162000-9175800	Strong transcription	Adipose Nuclei	Adipose
20	chr11:9162000-9191200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:9162400-9175400	Strong transcription	Liver	Liver
23	chr11:9162400-9175400	Strong transcription	HepG2	liver
24	chr11:9165600-9175400	Strong transcription	Brain Germinal Matrix	brain
25	chr11:9165800-9175200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:9166000-9200600	Weak transcription	Colonic Mucosa	Colon
27	chr11:9166400-9175600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr11:9167000-9175200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:9167600-9176000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:9167600-9176000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:9167800-9187600	Strong transcription	Placenta	Placenta
32	chr11:9169200-9198400	Weak transcription	Thymus	Thymus
33	chr11:9169400-9186400	Weak transcription	Fetal Intestine Small	intestine
34	chr11:9169600-9175400	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr11:9169600-9176000	Strong transcription	Hela-S3	cervix
36	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
37	chr11:9169800-9179400	Strong transcription	Brain Cingulate Gyrus	brain
38	chr11:9170200-9175400	Strong transcription	Brain Hippocampus Middle	brain
39	chr11:9171000-9182000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:9171600-9181800	Weak transcription	Fetal Brain Male	brain
41	chr11:9171800-9180400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:9171800-9191400	Weak transcription	Psoas Muscle	Psoas
43	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:9172000-9175200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:9172000-9181400	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:9172200-9177200	Weak transcription	HSMMtube	muscle
48	chr11:9172200-9197800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr11:9172200-9199600	Weak transcription	Gastric	stomach
50	chr11:9172400-9177000	Weak transcription	K562	blood

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