Variant report

Variant	rs11042209
Chromosome Location	chr11:9202864-9202865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1039209	1.00[MEX][hapmap]
rs10466509	0.85[AMR][1000 genomes]
rs11042198	1.00[AMR][1000 genomes]
rs11826349	0.87[AMR][1000 genomes]
rs12273976	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs12285553	0.85[AMR][1000 genomes]
rs12286174	0.85[AMR][1000 genomes]
rs12291263	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
4	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:9184200-9208200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:9184200-9216800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:9186800-9215800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:9194000-9203400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:9196200-9203800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:9196400-9203200	Strong transcription	NHLF	lung
15	chr11:9196400-9204000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:9196600-9203000	Strong transcription	HSMM	muscle
17	chr11:9196800-9208200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:9197000-9203000	Strong transcription	Primary B cells from cord blood	blood
19	chr11:9197000-9203000	Strong transcription	NH-A	brain
20	chr11:9197000-9203200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:9197000-9203200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:9197000-9203800	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:9197000-9205400	Strong transcription	Primary hematopoietic stem cells	blood
24	chr11:9197000-9210600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:9197200-9203600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:9197400-9203000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:9197400-9203400	Strong transcription	Primary T cells from cord blood	blood
28	chr11:9197600-9203000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:9197600-9203000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:9197600-9203000	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:9197600-9203200	Strong transcription	Fetal Muscle Leg	muscle
32	chr11:9197600-9203200	Strong transcription	HepG2	liver
33	chr11:9197600-9205600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr11:9197800-9203400	Strong transcription	Brain Germinal Matrix	brain
35	chr11:9197800-9203600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:9197800-9203600	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:9197800-9203600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:9198200-9203200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:9198200-9203600	Strong transcription	NHDF-Ad	bronchial
40	chr11:9198400-9203200	Strong transcription	Fetal Stomach	stomach
41	chr11:9198400-9203200	Strong transcription	Right Ventricle	heart
42	chr11:9198400-9209800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:9198400-9224600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:9198600-9203000	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr11:9199000-9203000	Strong transcription	Osteobl	bone
46	chr11:9199800-9230400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:9200000-9207200	Weak transcription	Gastric	stomach
48	chr11:9200000-9209200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:9200000-9225200	Weak transcription	Thymus	Thymus
50	chr11:9200200-9210600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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