Variant report

Variant	rs1046654
Chromosome Location	chr11:94231847-94231848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94225979..94229384-chr11:94230397..94235421,9	K562	blood:
2	chr11:94227017..94228715-chr11:94231164..94232764,2	MCF-7	breast:
3	chr11:94150497..94152449-chr11:94231090..94232947,2	K562	blood:

Variant related genes	Relation type
ENSG00000020922	Chromatin interaction
ENSG00000168876	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10765677	0.84[ASN][1000 genomes]
rs11601246	0.86[JPT][hapmap]
rs12270338	0.80[CHD][hapmap]
rs12807159	0.89[ASN][1000 genomes]
rs13447595	0.91[CHD][hapmap];0.89[MEX][hapmap]
rs13447623	0.91[CHD][hapmap]
rs13447720	1.00[ASW][hapmap];0.91[CHD][hapmap]
rs2067035	0.88[CHD][hapmap]
rs3740867	0.88[ASN][1000 genomes]
rs3758786	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3758789	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1046654	MRE11A	cis	cerebellum	SCAN
rs1046654	MRE11A	Cis_1M	lymphoblastoid	RTeQTL
rs1046654	FOLR4	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94227600-94233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:94227600-94234800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:94227800-94232800	Weak transcription	Spleen	Spleen
4	chr11:94227800-94235400	Weak transcription	Pancreas	Pancrea
5	chr11:94227800-94236400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:94227800-94237000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:94227800-94237000	Weak transcription	Aorta	Aorta
8	chr11:94227800-94238400	Weak transcription	Small Intestine	intestine
9	chr11:94227800-94238800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:94227800-94245200	Weak transcription	Gastric	stomach
11	chr11:94228000-94232000	Weak transcription	Psoas Muscle	Psoas
12	chr11:94228000-94235400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:94228000-94245000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:94228000-94245200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:94228000-94245800	Weak transcription	Stomach Mucosa	stomach
16	chr11:94228200-94232000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:94228400-94245200	Weak transcription	Fetal Stomach	stomach
18	chr11:94228600-94232200	Weak transcription	Fetal Heart	heart
19	chr11:94228600-94233000	Weak transcription	Brain Germinal Matrix	brain
20	chr11:94228600-94233800	Weak transcription	Fetal Intestine Small	intestine
21	chr11:94228600-94235200	Weak transcription	A549	lung
22	chr11:94229000-94232200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:94229200-94232200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:94229200-94232200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:94229200-94232600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:94229200-94233600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:94229200-94233600	Strong transcription	Dnd41	blood
28	chr11:94229600-94232600	Strong transcription	GM12878-XiMat	blood
29	chr11:94229600-94233600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:94229600-94235600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr11:94229800-94232000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:94229800-94232400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:94229800-94232600	Strong transcription	NH-A	brain
34	chr11:94229800-94232600	Strong transcription	Osteobl	bone
35	chr11:94229800-94233600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:94229800-94233800	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:94229800-94234000	Strong transcription	Fetal Thymus	thymus
38	chr11:94229800-94234200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:94229800-94234200	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:94229800-94234200	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr11:94229800-94234400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:94229800-94234400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:94229800-94234600	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:94229800-94235000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:94229800-94235200	Strong transcription	Liver	Liver
46	chr11:94229800-94235400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:94229800-94235400	Strong transcription	Primary T cells from cord blood	blood
48	chr11:94229800-94235400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr11:94229800-94235400	Strong transcription	Placenta	Placenta
50	chr11:94229800-94235600	Strong transcription	Primary T cells fromperipheralblood	blood

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