Variant report

Variant	rs3758789
Chromosome Location	chr11:94133124-94133125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1046654	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10765677	0.85[ASN][1000 genomes]
rs11601246	0.86[JPT][hapmap]
rs11819857	0.89[EUR][1000 genomes]
rs12270338	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12807159	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13447595	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13447623	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13447655	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13447720	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2067035	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3740867	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3758786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94132600-94135200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
2	chr11:94132800-94134800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
3	chr11:94133000-94133200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:94133000-94133200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr11:94133000-94133800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:94133000-94135000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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