Variant report

Variant	rs10467305
Chromosome Location	chr13:110676397-110676398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2225777	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9559710	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9559712	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9588072	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110671000-110676400	Weak transcription	NH-A	brain
2	chr13:110675000-110677000	Enhancers	Left Ventricle	heart
3	chr13:110675000-110677000	Enhancers	Right Atrium	heart
4	chr13:110675400-110677000	Enhancers	Ovary	ovary
5	chr13:110675400-110677400	Enhancers	Fetal Heart	heart
6	chr13:110675400-110683600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:110675600-110676400	Enhancers	Brain Substantia Nigra	brain
8	chr13:110675600-110676400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr13:110675600-110677000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:110675600-110677000	Enhancers	Fetal Stomach	stomach
11	chr13:110675600-110677200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:110675600-110677200	Enhancers	Rectal Smooth Muscle	rectum
13	chr13:110675600-110677400	Enhancers	Colon Smooth Muscle	Colon
14	chr13:110675800-110676400	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr13:110675800-110676600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr13:110675800-110676800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:110675800-110677000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:110675800-110677000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr13:110675800-110677000	Enhancers	Adipose Nuclei	Adipose
20	chr13:110675800-110677000	Enhancers	Fetal Muscle Trunk	muscle
21	chr13:110675800-110677000	Enhancers	Psoas Muscle	Psoas
22	chr13:110676000-110676800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:110676000-110677000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:110676000-110677000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:110676000-110677000	Enhancers	Brain Hippocampus Middle	brain
26	chr13:110676000-110677000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr13:110676000-110677000	Enhancers	HSMMtube	muscle
28	chr13:110676000-110677000	Enhancers	NHLF	lung
29	chr13:110676000-110677200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr13:110676000-110677200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr13:110676200-110676400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr13:110676200-110676600	Enhancers	Osteobl	bone
33	chr13:110676200-110676800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:110676200-110677000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr13:110676200-110677000	Enhancers	HSMM	muscle
36	chr13:110676200-110686200	Weak transcription	Aorta	Aorta

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