Variant report

Variant	rs9559712
Chromosome Location	chr13:110686295-110686296
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1029204	0.85[EUR][1000 genomes]
rs10467305	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1335807	0.85[EUR][1000 genomes]
rs2225777	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71419774	0.82[EUR][1000 genomes]
rs8000507	0.85[EUR][1000 genomes]
rs9521579	0.81[EUR][1000 genomes]
rs9559710	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9588072	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9805629	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110678400-110690600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:110680600-110688600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:110682200-110694600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:110683600-110690000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:110684000-110688600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:110686200-110686400	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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