Variant report

Variant	rs71419774
Chromosome Location	chr13:110679861-110679862
allele	CG/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1029204	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1335807	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1335808	0.87[ASN][1000 genomes]
rs2225777	0.85[EUR][1000 genomes]
rs4773111	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773112	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8000507	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9521579	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9559710	0.85[EUR][1000 genomes]
rs9559712	0.82[EUR][1000 genomes]
rs9559714	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110675400-110683600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:110676200-110686200	Weak transcription	Aorta	Aorta
3	chr13:110677000-110682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:110677000-110684800	Weak transcription	Brain Substantia Nigra	brain
5	chr13:110677200-110681000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:110677200-110682600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr13:110678400-110690600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:110679000-110680200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:110679400-110680600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:110679600-110680400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:110679600-110680400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr13:110679800-110680400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr13:110679800-110680400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:110679800-110680600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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