Variant report

Variant	rs9559714
Chromosome Location	chr13:110693213-110693214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1029204	0.90[ASN][1000 genomes]
rs1335807	0.90[ASN][1000 genomes]
rs1335808	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4773111	0.90[ASN][1000 genomes]
rs4773112	0.90[ASN][1000 genomes]
rs71419774	0.86[ASN][1000 genomes]
rs8000507	0.90[ASN][1000 genomes]
rs9521579	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110682200-110694600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:110687400-110696800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:110689200-110695600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:110689200-110695600	Weak transcription	Gastric	stomach
5	chr13:110689200-110696800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:110689200-110700200	Weak transcription	Right Atrium	heart
7	chr13:110689400-110695600	Weak transcription	Aorta	Aorta
8	chr13:110689400-110695800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:110689600-110694800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:110691600-110694600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:110691800-110697600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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